WashU Epigenome Browser

11/07/2014

10:43 am Bug #243 (New): Incorrect SNP coordinate based on SNP ID

I found a discrepancy on SNP coordinate on one example.
If you search rs10499197 on hg19 browser, the browser ret... Junchen Gu

09:37 am Feature #242 (New): Please add the option to remove genome comparison track

Right now, after you load a genome comparison track, there is no option to remove it like we have for other tracks. Junchen Gu

10/28/2014

06:47 am Bug #241 (Closed): cannot choose region from gene set view

Xin Zhou

06:47 am Bug #241 (Resolved): cannot choose region from gene set view

need to add flanking Xin Zhou

06:46 am Bug #240 (Resolved): can't zoom out in gene set view in mm9

please try add 1-2 kb flanking to each region, using the gene set edit app, then run gene set view again
sorry tha... Xin Zhou

10/27/2014

11:34 pm Bug #241 (Closed): cannot choose region from gene set view

* using Junchen's hub with session link: http://epigenomegateway.wustl.edu/browser/?genome=mm9&session=ZaEkeo3i9M&sta... Daofeng Li

11:34 pm Bug #240 (Resolved): can't zoom out in gene set view in mm9

I have a gene set for mm9:
chr15:36710067-36710087
chr6:34124968-34124989
chr9:109705906-109705932
chrX:1664172... Junchen Gu

01:57 pm Bug #239 (New): zooming in on a genomic region doesn't give the right region

I found this on mm9, if you first go to a big genomic location and you want to zoom in on certain region, when I use ... Junchen Gu

10/17/2014

06:08 pm Bug #237 (New): Potential bug in the json hub name?

I tried to display a hub that have _latest in the hub name and somehow the browser can't load the hub.
For exampl... Junchen Gu

10/16/2014

02:48 pm Support #236: Roadmap analysis hub crashes

yes, it's kind of slow, the hub got more than 10k tracks and have around 40 tracks on by default. Daofeng Li

02:33 pm Support #236 (New): Roadmap analysis hub crashes

Jing told me she is having trouble loading the Roadmap Epigenomics Analysis data hub. It crashes every time, for a fe... Rebecca Lowdon

10:02 am Support #234: Error in SE paper datahub

Sorry for this error and it have been fixed.
You can update your hub using this link http://epigenome.wustl.edu/SE... Daofeng Li

09:55 am Bug #235 (New): Gene shading feature inconsistent and needs to be made optional

I guess there is a new feature where genes you relocate to are shaded? I can see the value in this, but it needs to b... Rebecca Lowdon

09:44 am Support #234 (New): Error in SE paper datahub

I get the following error when I load the SE project datahub:
track MeDIP of BreMyo has unknown term id (HS2294) f... Rebecca Lowdon

10/15/2014

08:04 pm Bug #233 (Resolved): dbSNP track crashes

Fixed on both test and public server. If you open dbSNP track when view range is greater than 20kb, the track is auto... Xin Zhou

04:55 pm Bug #233: dbSNP track crashes

When I zoom in on a region, data appear in "full" mode. Maybe create a warning if there is too much data in a view ra... Rebecca Lowdon

04:53 pm Bug #233 (Resolved): dbSNP track crashes

Loaded the dbSNP track on a wide view range. The browser thinks the track loaded, but no data are shown. (image 1)
... Rebecca Lowdon

02:09 pm Bug #232 (Resolved): Matplot not working with sessions

Fixed on the public server! Please refresh browser and try again. Xin Zhou

11:15 am Bug #231 (Resolved): load hub and session issue

Rebecca Lowdon wrote:
> Another weird bug. The number of tracks loaded does not make sense. This is what I did:
> 1... Xin Zhou

10:55 am Bug #231: load hub and session issue

Re-loading sessions in the same instance also duplicates the Gene set view.
Rebecca Lowdon

10:52 am Bug #231: load hub and session issue

Modify this again.
1. opened new browser instance.
2. Load session ID ddSQFzBWvS
3. Click "Link" button for versio... Rebecca Lowdon

10:26 am Bug #232 (Resolved): Matplot not working with sessions

What I did:
1. Open new browser session.
2. Sessions app > enter session ID = ddSQFzBWvS and "Retrieve"
3. Enter v... Rebecca Lowdon

10:23 am Bug #231: load hub and session issue

Another weird bug. The number of tracks loaded does not make sense. This is what I did:
1. I first loaded my session... Rebecca Lowdon

10/14/2014

03:24 pm Bug #231 (Resolved): load hub and session issue

sorry I was trying to delete my duplicated comment and accidentally deleted the original issue Rebecca created, and I... Daofeng Li

02:11 pm Support #229 (Closed): IMR90 cell line incorrectly classified

Daofeng Li wrote:
> Thank you very much Rebecca.
> I have moved this term to "Fetal Cells/Tissues -> Fetal Lung".
Rebecca Lowdon

02:11 pm Support #228 (Closed): Samples without data

Daofeng Li wrote:
> Hi Rebecca,
>
> We used one metadata vocabulary that some samples were actually used by Encod... Rebecca Lowdon