WashUGb Issue Tracking System

11/14/2014

01:35 pm WashU Epigenome Browser Bug #245 (Resolved): Missing display of 0% methylated Cs in methylC track

Currently, when a CpG has a 0% methylation, with read coverage, there is no grey bar to indicate 0% methylation.
...

11/09/2014

11:39 pm WashU Epigenome Browser Feature #244 (New): Pop-up window for confirming zooming in on a region

UCSC browser now has this feature of a pop-up window when you try to zoom in on a region and asking to confirm the in...

11/07/2014

10:43 am WashU Epigenome Browser Bug #243 (New): Incorrect SNP coordinate based on SNP ID

I found a discrepancy on SNP coordinate on one example.
If you search rs10499197 on hg19 browser, the browser ret...

09:37 am WashU Epigenome Browser Feature #242 (New): Please add the option to remove genome comparison track

Right now, after you load a genome comparison track, there is no option to remove it like we have for other tracks.

10/27/2014

11:34 pm WashU Epigenome Browser Bug #240 (Resolved): can't zoom out in gene set view in mm9

I have a gene set for mm9:
chr15:36710067-36710087
chr6:34124968-34124989
chr9:109705906-109705932
chrX:1664172...

01:57 pm WashU Epigenome Browser Bug #239 (New): zooming in on a genomic region doesn't give the right region

I found this on mm9, if you first go to a big genomic location and you want to zoom in on certain region, when I use ...

10/17/2014

06:08 pm WashU Epigenome Browser Bug #237 (New): Potential bug in the json hub name?

I tried to display a hub that have _latest in the hub name and somehow the browser can't load the hub.
For exampl...

10/03/2014

12:49 pm WashU Epigenome Browser Bug #227 (New): missing 0% methylated CpG display in methylC track

Some 0% methylated CpGs are not displayed as a gray bar on methylC track.
Two examples in Tlr4 promoters of mm9. ...

05/14/2014

12:42 pm WashU Epigenome Browser Bug #193: Json syntax error when trying to jump to a new location

Zoom into a chromosome or just select a region on chromosome ideogram sometimes, not always gave the same error message

12:34 pm WashU Epigenome Browser Bug #193 (New): Json syntax error when trying to jump to a new location

See attached image for error message
You can reproduce by just load the hub and enter a new coordinate in the coor...