Bug #240

can't zoom out in gene set view in mm9

Added by Junchen Gu about 10 years ago. Updated about 10 years ago.

Status:Resolved Start date:10/27/2014
Priority:Normal Due date:
Assignee:Xin Zhou % Done:

0%
Category:- Spent time: -
Target version:-

Description

I have a gene set for mm9:

chr15:36710067-36710087
chr6:34124968-34124989
chr9:109705906-109705932
chrX:166417252-166417271
chr10:107773712-107773730
chr10:114718645-114718662
chr10:93395900-93395915
chr11:108110004-108110022
chr11:33380773-33380789
chr11:35752995-35753007
chr1:148749093-148749105
chr11:85508881-85508891
chr1:192377950-192377963
chr12:110311686-110311699
chr12:53579810-53579827
chr12:58605460-58605471
chr13:101358918-101358932
chr13:106230907-106230915
chr13:37749332-37749342
chr13:52268544-52268565

And I tried to look at it on my data hub:
http://epigenomegateway.wustl.edu/browser/?genome=mm9&datahub_jsonfile=http://remc.wustl.edu/jgu/mouse/8w/tracks/8w_mouse_hub.json

It says" Showing 33% of entire set" and I want to show 100%, so I tried the -1/3, -1, -5 button but none of them could zoom out further..

Here is the session of my view: http://epigenomegateway.wustl.edu/browser/?genome=mm9&session=ZaEkeo3i9M&statusId=244346231

History

#1
Updated by Xin Zhou about 10 years ago

  • Status changed from New to Resolved

please try add 1-2 kb flanking to each region, using the gene set edit app, then run gene set view again

sorry that the gene set doesn't work well on very short regions

Also available in: Atom PDF