WashU Epigenome Browser testing procedures¶

normal mode¶

navigation¶

• heatmap move, pan, zoom in/out
• track configuration, color/height/mode etc changes
• metadata heatmap, sort/order/redo sort etc
• (new) metadata heatmap color change

apps¶

• gene set (New, added Jul/12/2013)
  • adding, removing, renaming list
  • example list, coordinate list
  • bed file (be able to specify/switch column)
  • KEGG pathway
  • save and retrieve geneset under session
• genome snapshot
• svg output
• scatter plot
• secondary panel
  • IMPROVE HERE: list ALL possible operations applicable to secondary panel (e.g. add/remove/reorder tracks)
• You also need to test GENE PLOT

data/tracks¶

• system existed data set load/unload, tracks load/unload
• custom track, bed/sam/bigwig/bedgraph etc
• data hub
  h3. secondary panel
• configuration at this panel should also affect main panel?
• custom track

multiple genome panel¶

• newly add in July/2013
• adding new genome panel

embedding browser¶

• embed from TEST server http://cgs.wustl.edu/~xzhou/plugin/
• embed from PUBLIC server http://cgs.wustl.edu/~xzhou/embed/
• also http://vizhub.wustl.edu/

data hub¶

• track file detection error
• refresh cache
• track attributes (show/hide)
• gene set

metadata tree¶

• sorting, moving, fliping
• add system terms
• '''create custom meta terms'''

juxtaposing mode¶

• under following situation, do same test as above
  • gene set view
  • juxtapose on certain track (system/custom track etc)

long range¶

• loading of tracks
• change style
• circlet view
  1. show/hide/rearrange chromosomes
  2. add/remove/configure a wreath track
  3. repeat step 1 with wreath tracks displayed
  4. test if multiple circlet panels are responding well

session and urls¶

• save & retrieve
• url testing
  • url parameters reference: http://washugb.blogspot.com/2012/12/url-parameter-specification-effective.html
    '''Xin: URL testing could be automated, try to figure out ways to automate as many tests as possible)'''

URL parameters¶

• IMPROVE HERE add all URL parameter test cases, apply test case to both TEST and PUBLIC servers if applicable

browser compatibility¶

• important: '''test above on Firefox and Safari also'''