Activity

From 02/14/2014 to 03/15/2014

03/14/2014

10:48 am Bug #171 (Rejected): cannot load hub while showing secondary panels
separate issue, reported before Xin Zhou
12:05 am Bug #89 (Closed): mCRF tracks not recognized
Daofeng Li
12:04 am Bug #172 (Closed): methylC tracks cannot added back to secondary panels
Daofeng Li
12:03 am Bug #171: cannot load hub while showing secondary panels
* probably need adjust the background color? Daofeng Li
12:01 am Bug #130 (Closed): chromosome sequence display error
Daofeng Li
12:00 am Bug #143 (Closed): error when switching from intra- to inter-chromosomal display
Daofeng Li
12:00 am Bug #107 (Closed): handling of hub file errors
Daofeng Li

03/13/2014

11:59 pm Feature #162 (Closed): Tooltip information
Daofeng Li
11:59 pm Bug #175 (Closed): alignment issue with 2nd panel
Daofeng Li

03/12/2014

11:14 am Feature #139 (Closed): metadata heatmap compatibility between data hubs
Daofeng Li
11:14 am Bug #170 (Closed): methylC track cannot be hidden by default
Daofeng Li
11:12 am Bug #173 (Closed): coordinates jumping not working after modifying
Daofeng Li
11:12 am Bug #178 (Closed): gear button in embedded browser not work
Daofeng Li
11:11 am Bug #177 (Closed): refGene color change not kept in session
Daofeng Li
10:57 am Bug #177 (Resolved): refGene color change not kept in session
Fixed in v33.0.5 on TEST. This example recovers modified rendering style for both refGene and rmsk_ensemble tracks (G... Xin Zhou
08:57 am Bug #178 (Resolved): gear button in embedded browser not work
Fixed on both test and public. Thanks! Xin Zhou
12:16 am washugb v33 release
* We have released v33 of WashU EpiGenome Browser.
h2. Updates
# upload long-range interaction data: http://was...
Daofeng Li
12:11 am Bug #178 (Closed): gear button in embedded browser not work
* if click the gear button, an error happens:
Uncaught TypeError: Cannot read property 'style' of undefined
Daofeng Li

03/11/2014

02:56 pm Bug #177 (Closed): refGene color change not kept in session
* change gene struct color of refGene track, save session
* re-load session, the gene track still display the defaul...
Daofeng Li

03/08/2014

11:13 am Bug #175: alignment issue with 2nd panel
duplicating with #86, please keep track of things Xin Zhou

03/07/2014

07:26 am Bug #176 (Rejected): browser is not drag-move when there is no track in central canvas
Xin Zhou

03/06/2014

11:31 pm Bug #176 (Rejected): browser is not drag-move when there is no track in central canvas
* think about this situation
* I fired up the browser, added one long range track, when I want to drag and move, I c...
Daofeng Li
11:29 pm Bug #175: alignment issue with 2nd panel
* forget the figure.. Daofeng Li
11:28 pm Bug #175 (Closed): alignment issue with 2nd panel
* please see attachment figure for alignment issue
* there are additional space below meta header, and above rmsk_en...
Daofeng Li
11:27 pm Bug #174 (Closed): 2nd panel background color issue
Daofeng Li
05:23 pm Bug #170 (Resolved): methylC track cannot be hidden by default
fixed in v32.2.7
http://epgg-test.wustl.edu/browser/?genome=hg18&datahub_jsonfile=http://vizhub.wustl.edu/public/h...
Xin Zhou
05:22 pm Bug #173 (Resolved): coordinates jumping not working after modifying
fixed in v32.2.6 on test Xin Zhou
12:27 pm Bug #174 (Resolved): 2nd panel background color issue
fixed in v32.2.5 on test Xin Zhou

03/05/2014

10:36 pm Bug #174 (Closed): 2nd panel background color issue
* I found a minor issue, when we have set background color in main panel, after we add 2nd panel, we didn't see the b... Daofeng Li
06:08 pm Bug #172 (Resolved): methylC tracks cannot added back to secondary panels
fixed in v32.2.4 on test Xin Zhou
06:05 pm Bug #171 (Resolved): cannot load hub while showing secondary panels
fixed in v32.2.4 on test
Xin Zhou
01:30 pm Bug #173 (Closed): coordinates jumping not working after modifying
* a little bit hard to describe, please see this video: http://screencast.com/t/Vn7AfQ74y
* basically we use this re...
Daofeng Li

03/04/2014

04:58 pm Bug #172 (Closed): methylC tracks cannot added back to secondary panels
Load the browser with methylC tracks:
http://epigenomegateway.wustl.edu/browser/?genome=hg18&datahub_jsonfile=http...
Xin Zhou
02:57 pm Bug #171 (Rejected): cannot load hub while showing secondary panels
From URL parameter, create secondary panels
http://epigenomegateway.wustl.edu/browser/?genome=hg19&splinters=chr1:...
Xin Zhou

03/03/2014

11:22 pm Bug #154 (Closed): Cannot search for gene in embedded browser
Daofeng Li
11:20 pm Bug #141 (Closed): improper view range in session-restored gene set view
Daofeng Li
11:19 pm Bug #140 (Closed): error with tracks of same file URL
Daofeng Li
11:19 pm Bug #153 (Closed): track information display error
Daofeng Li
11:18 pm Bug #167 (Closed): metadata color map change not saved in session
Daofeng Li
11:16 pm Bug #169 (Closed): long range tracks not appeared in 2nd panel and also freeze 2nd panel
yes, seems the 2nd panel get working after a delay of 5 seconds here...closed. Daofeng Li
05:49 pm Bug #170 (Closed): methylC track cannot be hidden by default
methylC track cannot be hidden by default Xin Zhou
08:57 am Bug #169: long range tracks not appeared in 2nd panel and also freeze 2nd panel
yes, you are right.
I tried 3 times on Win7 last night, but didn't see this on MacOSX this morning. Will do more tes...
Daofeng Li
07:15 am Bug #169: long range tracks not appeared in 2nd panel and also freeze 2nd panel
cannot reproduce this problem on both TEST and PUBLIC
please test again and give more information
Xin Zhou

03/02/2014

11:32 pm Bug #169 (Closed): long range tracks not appeared in 2nd panel and also freeze 2nd panel
* steps I did
** load roadmap
** open 2nd panel
** load long range hub
** add IMR90 Hi-C
** see screenshot please
Daofeng Li

03/01/2014

12:59 am Bug #168 (New): 'pack and hide' status not saved in session
* the 'pack and hide' status could not be saved in session Daofeng Li

02/27/2014

11:21 am Bug #167 (Resolved): metadata color map change not saved in session
Fixed in v32.2.3 on TEST! Xin Zhou
10:57 am Bug #167 (Closed): metadata color map change not saved in session
* If I changed color of meta data color map, the setting could not be saved in session Daofeng Li
07:01 am Bug #166 (Rejected): submit default gene set error
Remove the "simplegene" track and it will be fine. Xin Zhou
12:09 am Bug #166 (Rejected): submit default gene set error
* Please see screenshot attached
Daofeng Li

02/19/2014

11:19 am Bug #165 (Closed): browser frozen when panning of BAM tracks
* Thanks for fixing! Daofeng Li
11:07 am Bug #165 (Resolved): browser frozen when panning of BAM tracks
Fixed in v32.1.8! Xin Zhou
10:15 am Bug #165 (Closed): browser frozen when panning of BAM tracks
* using this hub: http://epigenomegateway.wustl.edu/browser/?genome=hg19&datahub_jsonfile=http://cgs.wustl.edu/~dli/C... Daofeng Li
10:13 am Bug #164 (Closed): UI frozen when click 'remove all' from json hub
Daofeng Li
10:11 am Bug #164 (Resolved): UI frozen when click 'remove all' from json hub
Fixed in v32.1.7. Thanks! Xin Zhou
09:58 am Bug #164 (Closed): UI frozen when click 'remove all' from json hub
* loading this hub: http://epigenomegateway.wustl.edu/browser/?genome=hg19&datahub_jsonfile=http://cgs.wustl.edu/~dli... Daofeng Li

02/18/2014

03:39 pm Bug #163 (New): long responsive time while track missed in hub
* see Junchen's hub at http://remc.wustl.edu/jgu/human/remc/methylomes/methylomes_all_hub.json
* apache error log sh...
Daofeng Li
08:02 am Feature #162 (Resolved): Tooltip information
Implemented in v32.1.4. Thanks! Xin Zhou

02/15/2014

01:09 pm Bug #160 (Resolved): Custom PE BAM files unstable
Fixed in v32.1.4
http://epigenomegateway.wustl.edu/browser/?genome=danRer7&custombam=xx,http://cgs.wustl.edu/~rlow...
Xin Zhou
08:00 am Bug #153: track information display error
Missing GEO accession has been fixed. Xin Zhou

02/14/2014

10:18 pm Bug #147 (Closed): crash when track file not exist in json hub
fixed. Daofeng Li
10:17 pm Bug #153: track information display error
GEO links also could not be recovered? Daofeng Li
04:46 pm Bug #159 (Closed): Session not saving
Xin Zhou
04:45 pm Bug #155: browser url parameter for coordinate not working
Use the "native_track" keyword and add gene track to your JSON datahub.
Find example in this hub:
http://vizhub...
Xin Zhou
04:43 pm Bug #155: browser url parameter for coordinate not working
OK. I see.
Then how do I include the gene annotation track by default with my own data? When I uploaded my own tr...
Junchen Gu
04:43 pm Bug #157: refSeq gene position didn't keep in session
refSeq is a "native track". Current design only keeps order of custom tracks. Native tracks are all piled to the bottom. Xin Zhou
04:29 pm Bug #155 (Rejected): browser url parameter for coordinate not working
When the "session" and "statusId" parameters are in use, the "coordinate" parameter is disregarded, since the view ra... Xin Zhou
04:25 pm Bug #153 (Resolved): track information display error
Fixed in v32.1.3, but the track details from previous saved sessions cannot be recovered. Xin Zhou
03:58 pm Bug #147 (Resolved): crash when track file not exist in json hub
can you try again with the new code? Xin Zhou
03:31 pm Feature #162 (Closed): Tooltip information
Would be great if the tooltip could include per-read CIGAR strings, mapping quality scores, and maybe insert size inf... Rebecca Lowdon
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