Activity
From 02/06/2014 to 03/07/2014
03/07/2014
03/06/2014
- 11:31 pm Bug #176 (Rejected): browser is not drag-move when there is no track in central canvas
- * think about this situation
* I fired up the browser, added one long range track, when I want to drag and move, I c... - 11:29 pm Bug #175: alignment issue with 2nd panel
- * forget the figure..
- 11:28 pm Bug #175 (Closed): alignment issue with 2nd panel
- * please see attachment figure for alignment issue
* there are additional space below meta header, and above rmsk_en... - 11:27 pm Bug #174 (Closed): 2nd panel background color issue
- 05:23 pm Bug #170 (Resolved): methylC track cannot be hidden by default
- fixed in v32.2.7
http://epgg-test.wustl.edu/browser/?genome=hg18&datahub_jsonfile=http://vizhub.wustl.edu/public/h... - 05:22 pm Bug #173 (Resolved): coordinates jumping not working after modifying
- fixed in v32.2.6 on test
- 12:27 pm Bug #174 (Resolved): 2nd panel background color issue
- fixed in v32.2.5 on test
03/05/2014
- 10:36 pm Bug #174 (Closed): 2nd panel background color issue
- * I found a minor issue, when we have set background color in main panel, after we add 2nd panel, we didn't see the b...
- 06:08 pm Bug #172 (Resolved): methylC tracks cannot added back to secondary panels
- fixed in v32.2.4 on test
- 06:05 pm Bug #171 (Resolved): cannot load hub while showing secondary panels
- fixed in v32.2.4 on test
- 01:30 pm Bug #173 (Closed): coordinates jumping not working after modifying
- * a little bit hard to describe, please see this video: http://screencast.com/t/Vn7AfQ74y
* basically we use this re...
03/04/2014
- 04:58 pm Bug #172 (Closed): methylC tracks cannot added back to secondary panels
- Load the browser with methylC tracks:
http://epigenomegateway.wustl.edu/browser/?genome=hg18&datahub_jsonfile=http... - 02:57 pm Bug #171 (Rejected): cannot load hub while showing secondary panels
- From URL parameter, create secondary panels
http://epigenomegateway.wustl.edu/browser/?genome=hg19&splinters=chr1:...
03/03/2014
- 11:22 pm Bug #154 (Closed): Cannot search for gene in embedded browser
- 11:20 pm Bug #141 (Closed): improper view range in session-restored gene set view
- 11:19 pm Bug #140 (Closed): error with tracks of same file URL
- 11:19 pm Bug #153 (Closed): track information display error
- 11:18 pm Bug #167 (Closed): metadata color map change not saved in session
- 11:16 pm Bug #169 (Closed): long range tracks not appeared in 2nd panel and also freeze 2nd panel
- yes, seems the 2nd panel get working after a delay of 5 seconds here...closed.
- 05:49 pm Bug #170 (Closed): methylC track cannot be hidden by default
- methylC track cannot be hidden by default
- 08:57 am Bug #169: long range tracks not appeared in 2nd panel and also freeze 2nd panel
- yes, you are right.
I tried 3 times on Win7 last night, but didn't see this on MacOSX this morning. Will do more tes... - 07:15 am Bug #169: long range tracks not appeared in 2nd panel and also freeze 2nd panel
- cannot reproduce this problem on both TEST and PUBLIC
please test again and give more information
03/02/2014
- 11:32 pm Bug #169 (Closed): long range tracks not appeared in 2nd panel and also freeze 2nd panel
- * steps I did
** load roadmap
** open 2nd panel
** load long range hub
** add IMR90 Hi-C
** see screenshot please
03/01/2014
- 12:59 am Bug #168 (New): 'pack and hide' status not saved in session
- * the 'pack and hide' status could not be saved in session
02/27/2014
- 11:21 am Bug #167 (Resolved): metadata color map change not saved in session
- Fixed in v32.2.3 on TEST!
- 10:57 am Bug #167 (Closed): metadata color map change not saved in session
- * If I changed color of meta data color map, the setting could not be saved in session
- 07:01 am Bug #166 (Rejected): submit default gene set error
- Remove the "simplegene" track and it will be fine.
- 12:09 am Bug #166 (Rejected): submit default gene set error
- * Please see screenshot attached
02/19/2014
- 11:19 am Bug #165 (Closed): browser frozen when panning of BAM tracks
- * Thanks for fixing!
- 11:07 am Bug #165 (Resolved): browser frozen when panning of BAM tracks
- Fixed in v32.1.8!
- 10:15 am Bug #165 (Closed): browser frozen when panning of BAM tracks
- * using this hub: http://epigenomegateway.wustl.edu/browser/?genome=hg19&datahub_jsonfile=http://cgs.wustl.edu/~dli/C...
- 10:13 am Bug #164 (Closed): UI frozen when click 'remove all' from json hub
- 10:11 am Bug #164 (Resolved): UI frozen when click 'remove all' from json hub
- Fixed in v32.1.7. Thanks!
- 09:58 am Bug #164 (Closed): UI frozen when click 'remove all' from json hub
- * loading this hub: http://epigenomegateway.wustl.edu/browser/?genome=hg19&datahub_jsonfile=http://cgs.wustl.edu/~dli...
02/18/2014
- 03:39 pm Bug #163 (New): long responsive time while track missed in hub
- * see Junchen's hub at http://remc.wustl.edu/jgu/human/remc/methylomes/methylomes_all_hub.json
* apache error log sh... - 08:02 am Feature #162 (Resolved): Tooltip information
- Implemented in v32.1.4. Thanks!
02/15/2014
- 01:09 pm Bug #160 (Resolved): Custom PE BAM files unstable
- Fixed in v32.1.4
http://epigenomegateway.wustl.edu/browser/?genome=danRer7&custombam=xx,http://cgs.wustl.edu/~rlow... - 08:00 am Bug #153: track information display error
- Missing GEO accession has been fixed.
02/14/2014
- 10:18 pm Bug #147 (Closed): crash when track file not exist in json hub
- fixed.
- 10:17 pm Bug #153: track information display error
- GEO links also could not be recovered?
- 04:46 pm Bug #159 (Closed): Session not saving
- 04:45 pm Bug #155: browser url parameter for coordinate not working
- Use the "native_track" keyword and add gene track to your JSON datahub.
Find example in this hub:
http://vizhub... - 04:43 pm Bug #155: browser url parameter for coordinate not working
- OK. I see.
Then how do I include the gene annotation track by default with my own data? When I uploaded my own tr... - 04:43 pm Bug #157: refSeq gene position didn't keep in session
- refSeq is a "native track". Current design only keeps order of custom tracks. Native tracks are all piled to the bottom.
- 04:29 pm Bug #155 (Rejected): browser url parameter for coordinate not working
- When the "session" and "statusId" parameters are in use, the "coordinate" parameter is disregarded, since the view ra...
- 04:25 pm Bug #153 (Resolved): track information display error
- Fixed in v32.1.3, but the track details from previous saved sessions cannot be recovered.
- 03:58 pm Bug #147 (Resolved): crash when track file not exist in json hub
- can you try again with the new code?
- 03:31 pm Feature #162 (Closed): Tooltip information
- Would be great if the tooltip could include per-read CIGAR strings, mapping quality scores, and maybe insert size inf...
02/13/2014
- 05:59 pm Feature #158: wrapping for tooltip read information
- good suggestion :)
- 05:58 pm Bug #159: Session not saving
- my bad, wrong permission for the session folder. Should be fixed now. Please let me know if problem still exists.
- 03:32 pm Feature #161 (New): Include scaffolds on genome snapshot
- Would be nice to view scaffolds and unassigned chromosome fragments (in danRer7 referred to as "NA###") in the "genom...
- 03:27 pm Bug #160 (Closed): Custom PE BAM files unstable
- BAM tracks of paired-end alignments appear unstable on the browser. Relocating or zooming in/out causes reads to "mov...
- 03:20 pm Bug #159 (Closed): Session not saving
- Was trying to save a session to send you another bug ... but sessions not working on danRer7!
- 03:18 pm Feature #158 (New): wrapping for tooltip read information
- Would be nice if information in tooltip would automatically wrap to display all information. For example, I want to v...
02/11/2014
- 10:52 pm Bug #123 (Closed): embedded browser cannot handle hidden tracks
- 10:52 pm Feature #145 (Closed): loose format requirement for coordinates format
- * yes, it works great!
- 10:52 pm Bug #152 (Closed): clicking "zoom in" button makes browser unresponsive
- 10:51 pm Bug #148 (Closed): add geneset to genome snapshot error
- 10:50 pm Bug #157 (New): refSeq gene position didn't keep in session
- * move refSeq gene to top of canvas
* same session, load, the refSeq gene goes to bottom
02/07/2014
- 11:45 pm washugb v32 release
- * We have released v32 of WashU EpiGenome Browser.
h2. Updates
* shared metadata, for details please see: http:... - 11:32 pm Complete Epigenome Browser Bug #156 (New): WUGB popup link get blocked
- * the popup being blocked seems are default behavior of most modern browsers
- 04:11 pm Bug #155 (Rejected): browser url parameter for coordinate not working
- Xin,
If you go to my Feb. 2014 wiki and on Feb. 6-7, I have a table of regions and in the last column there are brow...
02/06/2014
- 02:11 pm Bug #154 (Resolved): Cannot search for gene in embedded browser
- Fixed in v32.0.7.
See this example: http://cgs.wustl.edu/~xzhou/embed/1.html - 02:04 pm Bug #154 (Closed): Cannot search for gene in embedded browser
- If the embedded browser only imports "base.js" it can't search and jump to a gene, this error will be given:
Objec...
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