Activity

From 01/07/2014 to 02/05/2014

02/05/2014

12:31 pm Bug #153 (Closed): track information display error
* same a session, load it with the link generated
* right click a track, choose Information, you will see some infor...
Daofeng Li
10:32 am Bug #152 (Resolved): clicking "zoom in" button makes browser unresponsive
Fixed in v32.0.3 on public browser
The bug is still there on test server for you to check out.
Xin Zhou
10:31 am Bug #152 (Closed): clicking "zoom in" button makes browser unresponsive
CLick the "+" (zoom in) button multiple times until getting this message:
At finest level, cannot zoom in
And t...
Xin Zhou

02/01/2014

08:35 am Feature #145 (Resolved): loose format requirement for coordinates format
Fixed in v32.0.1. Try these coordinates with multiple spaces separating fields:
chr7 55418829 55419003
chr7...
Xin Zhou

01/31/2014

08:41 am Bug #119 (Closed): fixedscale and track height probem in json hub
Daofeng Li
08:40 am Bug #144 (Closed): mouse over event for meta data header ( in track table ) disappear
Daofeng Li
08:40 am Bug #150 (Closed): js error and clickable 'None yet'
Daofeng Li
08:31 am Bug #150 (Resolved): js error and clickable 'None yet'
Fixed, thanks for finding out this tricky problem! Xin Zhou
12:19 am Bug #150 (Closed): js error and clickable 'None yet'
* the js errors in the console seems happened when open 2nd panel, while no crash happens
* the 'None yet' in 'custo...
Daofeng Li

01/30/2014

06:50 am Bug #149 (Rejected): possible coordinate issue
Xin Zhou
06:50 am Bug #149: possible coordinate issue
Thanks for reporting this. This is because our browser's coordinates are 0-offset, they all start from 0. But in UCSC... Xin Zhou
01:09 am Bug #149 (Rejected): possible coordinate issue
I was looking at a SNP (chr16:89986117-89986117) which is a C shown on UCSC browser (see attached image) but it's a G... Junchen Gu

01/28/2014

07:20 am Bug #148 (Resolved): add geneset to genome snapshot error
Fixed, thanks! Xin Zhou

01/27/2014

05:22 pm Bug #148 (Closed): add geneset to genome snapshot error
* submit a list of coordinates to gene set
* looks like browser didn't give a default name for the list, when you cl...
Daofeng Li
03:11 pm Bug #147 (Closed): crash when track file not exist in json hub
* I found if I renamed a file in my hub, loading the hub without updating it, browser will throw 'Json syntax error' Daofeng Li

01/24/2014

05:21 pm Support #136 (Closed): Collecting new Hi-C data sets
Daofeng Li
05:07 pm Support #136: Collecting new Hi-C data sets
* processed the data, but found the data was already in our browser.... Daofeng Li

01/23/2014

11:58 am Bug #140 (Resolved): error with tracks of same file URL
Fixed in v31.0.8
Load a hub with duplicated track URLs:
http://epigenomegateway.wustl.edu/browser/?genome=hg19&...
Xin Zhou
11:57 am Bug #144 (Resolved): mouse over event for meta data header ( in track table ) disappear
Fixed in v31.0.8 Xin Zhou
11:56 am Feature #139 (Resolved): metadata heatmap compatibility between data hubs
A mechanism for sharing metadata vocabulary among hubs is now available in v31.0.8
Example: a pair of hubs sharing...
Xin Zhou
08:35 am Bug #144: mouse over event for meta data header ( in track table ) disappear
I will put it back then! Xin Zhou
08:33 am Bug #144: mouse over event for meta data header ( in track table ) disappear
ok...at least Bo and I think it's pretty useful and convenient... Daofeng Li
08:32 am Feature #145: loose format requirement for coordinates format
how about not limit to 1 space delimited? People usually view DMRs copied from terminal may have multiple space betw... Daofeng Li
07:37 am Bug #146 (New): Session cannot save more than 1 custom metadata vocabularies
If 2 or more custom metadata vocabularies are loaded, only 1st one can be saved in session. Xin Zhou
07:08 am Feature #145: loose format requirement for coordinates format
what other formats do you suggest? Xin Zhou
07:06 am Bug #144: mouse over event for meta data header ( in track table ) disappear
No I removed this feature. Xin Zhou

01/22/2014

10:28 pm Feature #145 (Closed): loose format requirement for coordinates format
* in current version of browser, the format for coordinates have to be exactly same as 'chr:start-end' or 'chr start ... Daofeng Li
10:22 pm Bug #144 (Closed): mouse over event for meta data header ( in track table ) disappear
* on public site, when mouse over the meta data headers, no 'Select all' function appears like before
* attached is ...
Daofeng Li
12:41 pm Bug #143 (Resolved): error when switching from intra- to inter-chromosomal display
Fixed in v31.0.7 Xin Zhou
09:38 am Bug #143 (Closed): error when switching from intra- to inter-chromosomal display
Load the browser and show some tracks in intra-chromosomal region (e.g. the default location, only within one chromos... Xin Zhou
08:46 am washugb v31 release
* We have released v31 of WashU EpiGenome Browser.
h2. Updates
* Improved user interface, for details please se...
Daofeng Li
08:37 am Bug #142 (Closed): typo "Unselect All"
Daofeng Li
07:51 am Bug #142 (Resolved): typo "Unselect All"
Fixed, it was changed into "Deselect" instead of "Unselect" Xin Zhou

01/21/2014

10:30 pm Bug #142 (Closed): typo "Unselect All"
Daofeng Li
08:44 am Bug #141 (Resolved): improper view range in session-restored gene set view
Fixed in v31.0.5 Xin Zhou

01/20/2014

04:48 pm Support #136: Collecting new Hi-C data sets
user requested a Hi-C data set for fruit fly
Sexton T, Yaffe E, Kenigsberg E, Bantignies F et al. Three-dimensiona...
Xin Zhou

01/19/2014

01:31 pm Bug #141 (Closed): improper view range in session-restored gene set view
Run gsv using a gene set, zoom in to show part of the set, save session then restore it. In the restored view the ent... Xin Zhou

01/18/2014

01:24 pm Bug #140 (Closed): error with tracks of same file URL
browser has built-in mechanism to prevent a track from being loaded twice.
But when loading a hub with duplicated ...
Xin Zhou
09:50 am Feature #139 (Closed): metadata heatmap compatibility between data hubs
It would be nice if the metadata heatmap could integrate categories that are shared between data hubs. In this exampl... Rebecca Lowdon

01/17/2014

06:09 pm Bug #138 (Closed): track display outside of canvas
* what a quick fix! Closed! Daofeng Li
05:14 pm Bug #138 (Resolved): track display outside of canvas
Fixed in v31.0.1. Now when a second hub is added, the old tracks won't be pushed outside. Thanks! Xin Zhou
04:58 pm Bug #138 (Closed): track display outside of canvas
* if we got 2 json hub, load one by one
* the 1st loaded hub would be pull out of the canvas
* could use Jing's hub...
Daofeng Li

01/16/2014

07:48 am Bug #137 (Rejected): cutsom BED track not displayed
Sorry but for a bed track to be displayed, it must have at least 5 fields:
4th - name, if no name, use dot or leave ...
Xin Zhou

01/15/2014

11:23 am Bug #137 (Rejected): cutsom BED track not displayed
Custom bed tracks are not displayed properly when added to a session with a data hub.
First loaded data hub: http:...
Rebecca Lowdon
08:00 am Support #136 (Closed): Collecting new Hi-C data sets
Collect new Hi-C data sets and build them into the browser. Xin Zhou
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