Bug #149

possible coordinate issue

Added by Junchen Gu over 10 years ago. Updated over 10 years ago.

Status:Rejected Start date:01/30/2014
Priority:Normal Due date:
Assignee:Xin Zhou % Done:

0%
Category:- Spent time: -
Target version:-

Description

I was looking at a SNP (chr16:89986117-89986117) which is a C shown on UCSC browser (see attached image) but it's a G on epigenome browser (also see attached image) and it's one base off. Could it be possible there is some issue with our browser?

Human_chr16_89_986_117-89_986_118_-_UCSC_Genome_Browser_v294.png - UCSC browser (63.4 kB) Junchen Gu, 01/30/2014 01:09 am

epibrowser coordinates issue example.png - Epigenome browser (45.6 kB) Junchen Gu, 01/30/2014 01:09 am

History

#1
Updated by Xin Zhou over 10 years ago

Thanks for reporting this. This is because our browser's coordinates are 0-offset, they all start from 0. But in UCSC they display the coordinates from 1-offset, thus 1 base off.

#2
Updated by Xin Zhou over 10 years ago

  • Status changed from New to Rejected

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