Activity

From 01/01/2014 to 01/30/2014

06:50 am Bug #149 (Rejected): possible coordinate issue: Xin Zhou
06:50 am Bug #149: possible coordinate issue: Thanks for reporting this. This is because our browser's coordinates are 0-offset, they all start from 0. But in UCSC... Xin Zhou
01:09 am Bug #149 (Rejected): possible coordinate issue: I was looking at a SNP (chr16:89986117-89986117) which is a C shown on UCSC browser (see attached image) but it's a G... Junchen Gu

07:20 am Bug #148 (Resolved): add geneset to genome snapshot error: Fixed, thanks! Xin Zhou

05:22 pm Bug #148 (Closed): add geneset to genome snapshot error: * submit a list of coordinates to gene set
* looks like browser didn't give a default name for the list, when you cl... Daofeng Li
03:11 pm Bug #147 (Closed): crash when track file not exist in json hub: * I found if I renamed a file in my hub, loading the hub without updating it, browser will throw 'Json syntax error' Daofeng Li

05:21 pm Support #136 (Closed): Collecting new Hi-C data sets: Daofeng Li
05:07 pm Support #136: Collecting new Hi-C data sets: * processed the data, but found the data was already in our browser.... Daofeng Li

11:58 am Bug #140 (Resolved): error with tracks of same file URL: Fixed in v31.0.8
Load a hub with duplicated track URLs:
http://epigenomegateway.wustl.edu/browser/?genome=hg19&... Xin Zhou
11:57 am Bug #144 (Resolved): mouse over event for meta data header ( in track table ) disappear: Fixed in v31.0.8 Xin Zhou
11:56 am Feature #139 (Resolved): metadata heatmap compatibility between data hubs: A mechanism for sharing metadata vocabulary among hubs is now available in v31.0.8
Example: a pair of hubs sharing... Xin Zhou
08:35 am Bug #144: mouse over event for meta data header ( in track table ) disappear: I will put it back then! Xin Zhou
08:33 am Bug #144: mouse over event for meta data header ( in track table ) disappear: ok...at least Bo and I think it's pretty useful and convenient... Daofeng Li
08:32 am Feature #145: loose format requirement for coordinates format: how about not limit to 1 space delimited? People usually view DMRs copied from terminal may have multiple space betw... Daofeng Li
07:37 am Bug #146 (New): Session cannot save more than 1 custom metadata vocabularies: If 2 or more custom metadata vocabularies are loaded, only 1st one can be saved in session. Xin Zhou
07:08 am Feature #145: loose format requirement for coordinates format: what other formats do you suggest? Xin Zhou
07:06 am Bug #144: mouse over event for meta data header ( in track table ) disappear: No I removed this feature. Xin Zhou

10:28 pm Feature #145 (Closed): loose format requirement for coordinates format: * in current version of browser, the format for coordinates have to be exactly same as 'chr:start-end' or 'chr start ... Daofeng Li
10:22 pm Bug #144 (Closed): mouse over event for meta data header ( in track table ) disappear: * on public site, when mouse over the meta data headers, no 'Select all' function appears like before
* attached is ... Daofeng Li
12:41 pm Bug #143 (Resolved): error when switching from intra- to inter-chromosomal display: Fixed in v31.0.7 Xin Zhou
09:38 am Bug #143 (Closed): error when switching from intra- to inter-chromosomal display: Load the browser and show some tracks in intra-chromosomal region (e.g. the default location, only within one chromos... Xin Zhou
08:46 am washugb v31 release: * We have released v31 of WashU EpiGenome Browser.
h2. Updates
* Improved user interface, for details please se... Daofeng Li
08:37 am Bug #142 (Closed): typo "Unselect All": Daofeng Li
07:51 am Bug #142 (Resolved): typo "Unselect All": Fixed, it was changed into "Deselect" instead of "Unselect" Xin Zhou

10:30 pm Bug #142 (Closed): typo "Unselect All": Daofeng Li
08:44 am Bug #141 (Resolved): improper view range in session-restored gene set view: Fixed in v31.0.5 Xin Zhou

04:48 pm Support #136: Collecting new Hi-C data sets: user requested a Hi-C data set for fruit fly
Sexton T, Yaffe E, Kenigsberg E, Bantignies F et al. Three-dimensiona... Xin Zhou

01:31 pm Bug #141 (Closed): improper view range in session-restored gene set view: Run gsv using a gene set, zoom in to show part of the set, save session then restore it. In the restored view the ent... Xin Zhou

01:24 pm Bug #140 (Closed): error with tracks of same file URL: browser has built-in mechanism to prevent a track from being loaded twice.
But when loading a hub with duplicated ... Xin Zhou
09:50 am Feature #139 (Closed): metadata heatmap compatibility between data hubs: It would be nice if the metadata heatmap could integrate categories that are shared between data hubs. In this exampl... Rebecca Lowdon

06:09 pm Bug #138 (Closed): track display outside of canvas: * what a quick fix! Closed! Daofeng Li
05:14 pm Bug #138 (Resolved): track display outside of canvas: Fixed in v31.0.1. Now when a second hub is added, the old tracks won't be pushed outside. Thanks! Xin Zhou
04:58 pm Bug #138 (Closed): track display outside of canvas: * if we got 2 json hub, load one by one
* the 1st loaded hub would be pull out of the canvas
* could use Jing's hub... Daofeng Li

07:48 am Bug #137 (Rejected): cutsom BED track not displayed: Sorry but for a bed track to be displayed, it must have at least 5 fields:
4th - name, if no name, use dot or leave ... Xin Zhou

11:23 am Bug #137 (Rejected): cutsom BED track not displayed: Custom bed tracks are not displayed properly when added to a session with a data hub.
First loaded data hub: http:... Rebecca Lowdon
08:00 am Support #136 (Closed): Collecting new Hi-C data sets: Collect new Hi-C data sets and build them into the browser. Xin Zhou

11:11 pm Feature #135 (New): adjust track order in genome snapshot: * It might be useful that users could change the order of tracks in genome snapshot panel
* looks like same 'gene se... Daofeng Li

10:09 pm Feature #134 (New): Track configuration on ipad: *Configure a track could be only be accessed by right click
*On ipad, don't know how to do 'right click'
*Would it ... Daofeng Li

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