Activity

From 09/26/2014 to 10/25/2014

10/17/2014

06:08 pm Bug #237 (New): Potential bug in the json hub name?
I tried to display a hub that have _latest in the hub name and somehow the browser can't load the hub.
For exampl...
Junchen Gu

10/16/2014

02:48 pm Support #236: Roadmap analysis hub crashes
yes, it's kind of slow, the hub got more than 10k tracks and have around 40 tracks on by default. Daofeng Li
02:33 pm Support #236 (New): Roadmap analysis hub crashes
Jing told me she is having trouble loading the Roadmap Epigenomics Analysis data hub. It crashes every time, for a fe... Rebecca Lowdon
10:02 am Support #234: Error in SE paper datahub
Sorry for this error and it have been fixed.
You can update your hub using this link http://epigenome.wustl.edu/SE...
Daofeng Li
09:55 am Bug #235 (New): Gene shading feature inconsistent and needs to be made optional
I guess there is a new feature where genes you relocate to are shaded? I can see the value in this, but it needs to b... Rebecca Lowdon
09:44 am Support #234 (New): Error in SE paper datahub
I get the following error when I load the SE project datahub:
track MeDIP of BreMyo has unknown term id (HS2294) f...
Rebecca Lowdon

10/15/2014

08:04 pm Bug #233 (Resolved): dbSNP track crashes
Fixed on both test and public server. If you open dbSNP track when view range is greater than 20kb, the track is auto... Xin Zhou
04:55 pm Bug #233: dbSNP track crashes
When I zoom in on a region, data appear in "full" mode. Maybe create a warning if there is too much data in a view ra... Rebecca Lowdon
04:53 pm Bug #233 (Resolved): dbSNP track crashes
Loaded the dbSNP track on a wide view range. The browser thinks the track loaded, but no data are shown. (image 1)
...
Rebecca Lowdon
02:09 pm Bug #232 (Resolved): Matplot not working with sessions
Fixed on the public server! Please refresh browser and try again. Xin Zhou
11:15 am Bug #231 (Resolved): load hub and session issue
Rebecca Lowdon wrote:
> Another weird bug. The number of tracks loaded does not make sense. This is what I did:
> 1...
Xin Zhou
10:55 am Bug #231: load hub and session issue
Re-loading sessions in the same instance also duplicates the Gene set view.
Rebecca Lowdon
10:52 am Bug #231: load hub and session issue
Modify this again.
1. opened new browser instance.
2. Load session ID ddSQFzBWvS
3. Click "Link" button for versio...
Rebecca Lowdon
10:26 am Bug #232 (Resolved): Matplot not working with sessions
What I did:
1. Open new browser session.
2. Sessions app > enter session ID = ddSQFzBWvS and "Retrieve"
3. Enter v...
Rebecca Lowdon
10:23 am Bug #231: load hub and session issue
Another weird bug. The number of tracks loaded does not make sense. This is what I did:
1. I first loaded my session...
Rebecca Lowdon

10/14/2014

03:24 pm Bug #231 (Resolved): load hub and session issue
sorry I was trying to delete my duplicated comment and accidentally deleted the original issue Rebecca created, and I... Daofeng Li
02:11 pm Support #229 (Closed): IMR90 cell line incorrectly classified
Daofeng Li wrote:
> Thank you very much Rebecca.
> I have moved this term to "Fetal Cells/Tissues -> Fetal Lung".
Rebecca Lowdon
02:11 pm Support #228 (Closed): Samples without data
Daofeng Li wrote:
> Hi Rebecca,
>
> We used one metadata vocabulary that some samples were actually used by Encod...
Rebecca Lowdon

10/06/2014

11:39 pm Support #229: IMR90 cell line incorrectly classified
Thank you very much Rebecca.
I have moved this term to "Fetal Cells/Tissues -> Fetal Lung".
Daofeng Li
11:18 pm Support #228: Samples without data
Hi Rebecca,
We used one metadata vocabulary that some samples were actually used by Encode, thus samples from Enco...
Daofeng Li
10:33 am Support #229 (Closed): IMR90 cell line incorrectly classified
I think the IMR90 cell line should not be classified as an ES/iPS-derived cell. It is a primary cell culture: http://... Rebecca Lowdon
10:27 am Support #228 (Closed): Samples without data
Why are there so many samples in the Roadmap data hub without associated datasets? Rebecca Lowdon

10/03/2014

01:02 pm Bug #227: missing 0% methylated CpG display in methylC track
Also see this session link: http://epigenomegateway.wustl.edu/browser/?genome=mm9&session=9BJzdPkxaZ&statusId=2132385799 Daofeng Li
12:49 pm Bug #227 (New): missing 0% methylated CpG display in methylC track
Some 0% methylated CpGs are not displayed as a gray bar on methylC track.
Two examples in Tlr4 promoters of mm9. ...
Junchen Gu
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