WashU Epigenome Browser

10/17/2014

06:08 pm Bug #237 (New): Potential bug in the json hub name?

I tried to display a hub that have _latest in the hub name and somehow the browser can't load the hub.
For exampl... Junchen Gu

10/16/2014

02:48 pm Support #236: Roadmap analysis hub crashes

yes, it's kind of slow, the hub got more than 10k tracks and have around 40 tracks on by default. Daofeng Li

02:33 pm Support #236 (New): Roadmap analysis hub crashes

Jing told me she is having trouble loading the Roadmap Epigenomics Analysis data hub. It crashes every time, for a fe... Rebecca Lowdon

10:02 am Support #234: Error in SE paper datahub

Sorry for this error and it have been fixed.
You can update your hub using this link http://epigenome.wustl.edu/SE... Daofeng Li

09:55 am Bug #235 (New): Gene shading feature inconsistent and needs to be made optional

I guess there is a new feature where genes you relocate to are shaded? I can see the value in this, but it needs to b... Rebecca Lowdon

09:44 am Support #234 (New): Error in SE paper datahub

I get the following error when I load the SE project datahub:
track MeDIP of BreMyo has unknown term id (HS2294) f... Rebecca Lowdon

10/15/2014

08:04 pm Bug #233 (Resolved): dbSNP track crashes

Fixed on both test and public server. If you open dbSNP track when view range is greater than 20kb, the track is auto... Xin Zhou

04:55 pm Bug #233: dbSNP track crashes

When I zoom in on a region, data appear in "full" mode. Maybe create a warning if there is too much data in a view ra... Rebecca Lowdon

04:53 pm Bug #233 (Resolved): dbSNP track crashes

Loaded the dbSNP track on a wide view range. The browser thinks the track loaded, but no data are shown. (image 1)
... Rebecca Lowdon

02:09 pm Bug #232 (Resolved): Matplot not working with sessions

Fixed on the public server! Please refresh browser and try again. Xin Zhou

11:15 am Bug #231 (Resolved): load hub and session issue

Rebecca Lowdon wrote:
> Another weird bug. The number of tracks loaded does not make sense. This is what I did:
> 1... Xin Zhou

10:55 am Bug #231: load hub and session issue

Re-loading sessions in the same instance also duplicates the Gene set view.
Rebecca Lowdon

10:52 am Bug #231: load hub and session issue

Modify this again.
1. opened new browser instance.
2. Load session ID ddSQFzBWvS
3. Click "Link" button for versio... Rebecca Lowdon

10:26 am Bug #232 (Resolved): Matplot not working with sessions

What I did:
1. Open new browser session.
2. Sessions app > enter session ID = ddSQFzBWvS and "Retrieve"
3. Enter v... Rebecca Lowdon

10:23 am Bug #231: load hub and session issue

Another weird bug. The number of tracks loaded does not make sense. This is what I did:
1. I first loaded my session... Rebecca Lowdon

10/14/2014

03:24 pm Bug #231 (Resolved): load hub and session issue

sorry I was trying to delete my duplicated comment and accidentally deleted the original issue Rebecca created, and I... Daofeng Li

02:11 pm Support #229 (Closed): IMR90 cell line incorrectly classified

Daofeng Li wrote:
> Thank you very much Rebecca.
> I have moved this term to "Fetal Cells/Tissues -> Fetal Lung".
Rebecca Lowdon

02:11 pm Support #228 (Closed): Samples without data

Daofeng Li wrote:
> Hi Rebecca,
>
> We used one metadata vocabulary that some samples were actually used by Encod... Rebecca Lowdon

10/06/2014

11:39 pm Support #229: IMR90 cell line incorrectly classified

Thank you very much Rebecca.
I have moved this term to "Fetal Cells/Tissues -> Fetal Lung". Daofeng Li

11:18 pm Support #228: Samples without data

Hi Rebecca,
We used one metadata vocabulary that some samples were actually used by Encode, thus samples from Enco... Daofeng Li

10:33 am Support #229 (Closed): IMR90 cell line incorrectly classified

I think the IMR90 cell line should not be classified as an ES/iPS-derived cell. It is a primary cell culture: http://... Rebecca Lowdon

10:27 am Support #228 (Closed): Samples without data

Why are there so many samples in the Roadmap data hub without associated datasets? Rebecca Lowdon

10/03/2014

01:02 pm Bug #227: missing 0% methylated CpG display in methylC track

Also see this session link: http://epigenomegateway.wustl.edu/browser/?genome=mm9&session=9BJzdPkxaZ&statusId=2132385799 Daofeng Li

12:49 pm Bug #227 (New): missing 0% methylated CpG display in methylC track

Some 0% methylated CpGs are not displayed as a gray bar on methylC track.
Two examples in Tlr4 promoters of mm9. ... Junchen Gu