Bug #46

Coordinate issue in hg19

Added by Junchen Gu over 10 years ago. Updated over 10 years ago.

Status:New Start date:09/18/2013
Priority:Normal Due date:
Assignee:Xin Zhou % Done:

0%
Category:- Spent time: -
Target version:-

Description

I found this issue in hg19:

Steps to reproduce:

copy chr5:131800537-131801093 into the coordinate window and click go;

Then the browser shows chr5:131800537-131800982 instead of chr5:131800537-131801093.

I also tried to modify the end coordinate(131801093) and they all go to chr5:131800537-131800982.

See pictures for the browser shot.

WashU Epigenome Browser.jpg (75.6 kB) Junchen Gu, 09/18/2013 02:24 pm

WashU Epigenome Browser 2.png (59.4 kB) Junchen Gu, 09/19/2013 08:13 am

History

#1
Updated by Xin Zhou over 10 years ago

cannot reproduce this problem

#2
Updated by Junchen Gu over 10 years ago

Weird.. I just tried on my laptop and still have the same problem but now the coordinate is different again..

#3
Updated by Xin Zhou over 10 years ago

Now I see the problem. It is because on a wide zoom level in the browser, one pixel width of the horizontal axis spans a range of basepairs (or a bin). When browser relocates to a coordinate from text input, the landing coordinate may starts from a bin containing the original start, thus comes the small discrepancy. I will try to solve it.

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