Activity
From 08/21/2013 to 09/19/2013
09/19/2013
- 10:16 am Bug #46: Coordinate issue in hg19
- Now I see the problem. It is because on a wide zoom level in the browser, one pixel width of the horizontal axis span...
- 08:13 am Bug #46: Coordinate issue in hg19
- Weird.. I just tried on my laptop and still have the same problem but now the coordinate is different again..
- 07:45 am Bug #46: Coordinate issue in hg19
- cannot reproduce this problem
09/18/2013
- 10:59 pm Feature #48 (New): automatically refresh cache
- * I think it might be useful that the browser could refresh cache automatically
- 10:54 pm Bug #47 (Closed): wrong Y axis range display
- Solved and closed.
- 06:59 pm Bug #47 (Resolved): wrong Y axis range display
- Fixed. Please test it thanks!
- 06:26 pm Bug #47 (Closed): wrong Y axis range display
- showing hg18 mm1s default tracks
* applying rpm/bp normalization method to the read density data
* the five bam den... - 02:24 pm Bug #46 (New): Coordinate issue in hg19
- I found this issue in hg19:
Steps to reproduce:
copy chr5:131800537-131801093 into the coordinate window and cl... - 08:21 am Bug #43 (Closed): screenshot error on hub
- solved and closed!
- 08:18 am Bug #45 (Closed): mappability track display issue
- confirmed solved.
- 08:17 am Bug #45 (Resolved): mappability track display issue
- Fixed. This was a bug that under "automatic scale mode", if all values of the track are >0, the Y scale minimum value...
09/17/2013
- 11:00 pm Bug #45 (Closed): mappability track display issue
- * the browser display the 36mer mappability track with min value as 0
* a screenshot attached
* while if I query th... - 02:22 pm Bug #43 (Resolved): screenshot error on hub
- Thanks so much for finding this bug! The track that has trouble with SVG output is "grouped", which means it shares Y...
- 08:50 am Bug #31 (Closed): Cannot refresh Tabix index file
- 08:49 am Bug #44 (Closed): long range track display weird in SVG output
- * noticed this issue before, but could be solved by using PDF files instead
* currently a people mailed our list, he...
09/13/2013
- 10:08 pm Bug #37 (Closed): track loading indicator text always display 'working' after finish of loading
- closed!
- 09:58 pm Bug #38 (Closed): new hub Turn off Gene Set View not work
- closed!
- 09:58 pm Bug #39 (Closed): json syntax error when running gene set view
- closed!
- 09:58 pm Bug #40 (Closed): gene plot crashed on gene set of json hub
- 09:57 pm Bug #41 (Closed): scatter plot json error
- 09:57 pm Bug #40: gene plot crashed on gene set of json hub
- closed!
- 09:57 pm Bug #41: scatter plot json error
- closed!
- 09:57 pm Bug #42 (Closed): json hub load error
- closed!
- 09:56 pm Bug #43 (Closed): screenshot error on hub
- * using hub http://vizhub.wustl.edu/hubSample/hg19/hub3.json
* Apps->Screenshot
* An error 'Uncaught TypeError: Can... - 12:19 pm Bug #37 (Resolved): track loading indicator text always display 'working' after finish of loading
- fixed in v23.3, please test, thanks!
- 09:07 am Feature #14 (Closed): Custom categorical track
- 09:06 am Feature #34 (Closed): add soybean genome
- 09:06 am Feature #35 (Closed): add common bean genome
- 09:06 am Feature #36 (Closed): add Brassica Rapa genome
- 07:33 am Bug #42 (Resolved): json hub load error
- fixed
Change to datahub json format: json objects must be enclosed inside [] (on test browser)
09/12/2013
- 10:24 pm Bug #42 (Closed): json hub load error
- * use the hub http://vizhub.wustl.edu/hubSample/hg19/hub3.json
* missing type information error
* repeat 3 times - 08:34 am Bug #41 (Resolved): scatter plot json error
- fixed on test browser
- 08:34 am Bug #40 (Resolved): gene plot crashed on gene set of json hub
- fixed on test browser
- 08:34 am Bug #39 (Resolved): json syntax error when running gene set view
- fixed on test browser
- 08:33 am Bug #38 (Resolved): new hub Turn off Gene Set View not work
- fixed on test server
09/11/2013
- 09:43 pm Bug #41 (Closed): scatter plot json error
- * using json hub http://vizhub.wustl.edu/hubSample/hg19/hub3.json
* select scatter plot for 1st gene set with any 2 ... - 09:42 pm Bug #40 (Closed): gene plot crashed on gene set of json hub
- * using hub http://vizhub.wustl.edu/hubSample/hg19/hub3.json for hg19
* do gene plot on 2nd gene set
* crashed with... - 09:41 pm Bug #39 (Closed): json syntax error when running gene set view
- * using the hub for hg19: http://vizhub.wustl.edu/hubSample/hg19/hub3.json
* run gene set view on 2nd gene set
* cr... - 09:39 pm Bug #38 (Closed): new hub Turn off Gene Set View not work
- * using the new json hub for hg19: http://vizhub.wustl.edu/hubSample/hg19/hub3.json
* after gene set view on 1st gen...
09/03/2013
- 10:18 pm Bug #37 (Closed): track loading indicator text always display 'working' after finish of loading
- * the will happen if you click the header of each group
* for example, you click 'Expression', then 'add selected'
...
08/25/2013
- 05:22 pm Feature #36: add Brassica Rapa genome
- forget the screenshot...
- 05:20 pm Feature #36: add Brassica Rapa genome
- added to test server.
While I got a Json syntax error when using chromosome to jump to another location.
the er...
08/24/2013
- 03:06 pm Feature #36: add Brassica Rapa genome
- Have problem with downloading of the data.
Tried registration few times, was not able to access the data. - 09:15 am Feature #35: add common bean genome
- fixed
- 04:01 am Feature #36 (Closed): add Brassica Rapa genome
- http://brassicadb.org/brad/downloadOverview.php
- 03:58 am Feature #35: add common bean genome
- use "common bean" instead of "commonbean" for species name
Pay attention to spelling!
08/23/2013
- 10:02 pm Feature #34: add soybean genome
- Thanks, fixed!
- 10:02 pm Feature #35: add common bean genome
- Thanks, fixed!
- 09:27 pm Feature #35: add common bean genome
- same problem as soybean genome, please remove trailing comma from "defaultScaffold"
- 09:07 pm Feature #34: add soybean genome
- thanks a lot!
Scaffold listing is not shown (click blue coordinate button, choose "zoom into a chrom"), please rem...
08/22/2013
- 12:30 pm Feature #35: add common bean genome
- added to test
- 12:27 pm Revision 52e54a06: add soybean and commonbean, fix mm10 decor link
- 12:27 pm Browser Metadata Revision 52e54a06: add soybean and commonbean, fix mm10 decor link
08/21/2013
- 06:17 pm Feature #34: add soybean genome
- * soybean added to test.
* Could you please review and let me know your suggestions? - 08:36 am Feature #35 (Closed): add common bean genome
- genome information source:
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Pvulgaris/assembly/ - 08:35 am Feature #34 (Closed): add soybean genome
- genome information source:
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Gmax/assembly/
requested by a soybe...
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