Activity
From 12/03/2013 to 01/01/2014
01/01/2014
- 10:09 pm Feature #134 (New): Track configuration on ipad
- *Configure a track could be only be accessed by right click
*On ipad, don't know how to do 'right click'
*Would it ...
12/26/2013
- 04:43 pm Bug #133 (Rejected): custom bed submit error
- Invalid format, 5th field should be unique integer
This format is outdated, better use the new JSON format (like g... - 03:56 pm Bug #133 (Rejected): custom bed submit error
- * url: http://cgs.wustl.edu/~dli/DM.fimo.chrombed.gz
* same file works for test server, when submit to public server... - 03:55 pm Bug #132 (Closed): default tracks were not be able to be added to genome snapshot
- * fixed
12/23/2013
- 09:36 am Feature #58 (Resolved): make publichubs for ENCODE tracks
- 09:35 am Bug #132 (Resolved): default tracks were not be able to be added to genome snapshot
- 09:35 am Bug #132: default tracks were not be able to be added to genome snapshot
- Fixed! Thanks.
- 09:10 am Bug #130 (Resolved): chromosome sequence display error
- Fixed in v30.5
12/22/2013
- 09:15 pm Bug #131 (Closed): new genome have no 'Tracks' button
- fixed and closed
- 08:43 pm Bug #132 (Closed): default tracks were not be able to be added to genome snapshot
- * v30.5
* loading hg19
* in genome snapshot panel, for example the refseq track was listed, but could not be able t...
12/21/2013
- 08:10 am Bug #131 (Resolved): new genome have no 'Tracks' button
- Definitely a bug, fixed!
12/20/2013
- 11:27 pm Bug #131 (Closed): new genome have no 'Tracks' button
- * add new genome from 'add new genome' button
* no 'Tracks' button
* not sure it's a design or a bug - 02:13 pm Bug #130 (Closed): chromosome sequence display error
- chromosome sequence should be printed on chromosome bar at sufficient zoom-in level. During gene set view, zoom in at...
- 09:03 am Bug #129 (Rejected): native tracks not shown in public hub
- refseq and rmsk_ensemble are so called "native annotation tracks" and they do not belong to Roadmap track hub so they...
- 08:57 am Bug #129 (Rejected): native tracks not shown in public hub
- * the refseq and rmsk_ensemble didn't shown in public hub
* http://epgg-test.wustl.edu/browser/?genome=hg19&publichu... - 07:27 am Bug #119 (Resolved): fixedscale and track height probem in json hub
- Remaining issues fixed in v30.4.1
* native track height configuration
* track order in the hub - 07:25 am Bug #123 (Resolved): embedded browser cannot handle hidden tracks
- Fixed in v30.4.1
12/19/2013
- 10:23 pm Bug #124 (Closed): Querying for SOX2 but got SOX21 when adding gene set
- Fixed and closed.
- 10:20 pm Bug #126 (Closed): genome snapshot error
- 10:20 pm Bug #126: genome snapshot error
- Fixed and closed.
- 10:20 pm Bug #125 (Closed): could not select numerical track from geneplot
- Fixed and closed.
- 10:18 pm Bug #127 (Closed): could not select track for scatter plot
- Fixed and closed.
- 08:23 am Bug #125 (Resolved): could not select numerical track from geneplot
- Fixed in v30.4.1
- 08:23 am Bug #127 (Resolved): could not select track for scatter plot
- 08:23 am Bug #127: could not select track for scatter plot
- Fixed in v30.4.1
- 08:22 am Bug #128 (Rejected): upload a session didn't show the status list
- Not a bug it's the way it currently works. Downloaded session does not remember its original session group.
- 07:44 am Bug #126 (Resolved): genome snapshot error
- Fixed in v30.4.1. Thanks!
12/18/2013
- 10:01 pm Bug #128 (Rejected): upload a session didn't show the status list
- * use the session id could show the status list
* a bug or a design? - 09:55 pm Bug #127 (Closed): could not select track for scatter plot
- * like issue #125
- 09:51 pm Bug #126 (Closed): genome snapshot error
- * the new v30.4 code
* loading roadmap hub
* select genome snapshot -> add tracks
* see error from attached screen... - 09:48 pm Bug #125 (Closed): could not select numerical track from geneplot
- * the new v30.4 code
* after load Roadmap hub, could not add numerical tracks when doing geneplot - 07:21 am Bug #122: defaultcontent=on behavior differently since v30.2
- Yes good point. Now you will need to import Roadmap hub to show these default tracks. I will make it possible for emb...
12/17/2013
- 05:40 pm Bug #122: defaultcontent=on behavior differently since v30.2
- * this change would affect the embedded browser with default tracks
** like http://cgs.wustl.edu/~xzhou/plugin/1.htm...
12/16/2013
- 10:03 am Bug #122 (Rejected): defaultcontent=on behavior differently since v30.2
- This is not an issue, rather a feature change.
There's no default dataset anymore. User must specifically choose a... - 09:29 am Bug #124 (Resolved): Querying for SOX2 but got SOX21 when adding gene set
- Fixed on public browser.
- 09:28 am Bug #124 (Closed): Querying for SOX2 but got SOX21 when adding gene set
- Add gene set > enter SOX2 > Submit, but got SOX21 instead
12/15/2013
- 09:38 am Bug #123 (Closed): embedded browser cannot handle hidden tracks
- If a track is set to be hidden by default, the embedding fails
12/13/2013
- 11:37 pm Bug #122 (Rejected): defaultcontent=on behavior differently since v30.2
- * defaultcontent=on still works
* now if users want to see default tracks, have to use following link:
**http://epg...
12/10/2013
- 01:40 pm Bug #121 (Closed): duplicated display of meta colormap
- 01:22 pm Bug #121 (Resolved): duplicated display of meta colormap
- Fixed! Thanks,
- 01:08 pm Bug #121 (Closed): duplicated display of meta colormap
- * the new v30.2 code at test
* after loading roadmap then load encode, the metadata color map display 2 Sample and 2...
12/06/2013
- 12:55 pm Bug #120 (Closed): custom bed track strand issue
- * yes, indeed.
- 12:48 pm Bug #120 (Resolved): custom bed track strand issue
- fixed on public browser.
- 12:18 pm Bug #120 (Closed): custom bed track strand issue
- * the strand would display as 'reverse' when the strand was actually a dot '.'
* see Hyungjoo's hub (DMR tracks) fo... - 07:00 am Bug #119: fixedscale and track height probem in json hub
- tracks with "group:1" attribute all share a common scale range and the range is automatic. You cannot apply fixed sca...
- 12:30 am Bug #83 (Closed): oversize text in SVG on Firefox
- 12:29 am Bug #116 (Closed): chromHMM tracks cannot be found by "chromhmm" keyword
- 12:29 am washugb v30 release
- * We have released v30 of WashU EpiGenome Browser.
h2. Updates:
* custom gene tracks, more details please see: ... - 12:27 am Bug #119 (Closed): fixedscale and track height probem in json hub
- * I am working with Hyungjoo for his hub
* url: http://remc.wustl.edu/hyungjoo/hub_danRer7/hub_Zv9_DNAme.json
* pro...
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