Activity

From 11/25/2013 to 12/24/2013

12/23/2013

09:36 am Feature #58 (Resolved): make publichubs for ENCODE tracks
Xin Zhou
09:35 am Bug #132 (Resolved): default tracks were not be able to be added to genome snapshot
Xin Zhou
09:35 am Bug #132: default tracks were not be able to be added to genome snapshot
Fixed! Thanks. Xin Zhou
09:10 am Bug #130 (Resolved): chromosome sequence display error
Fixed in v30.5 Xin Zhou

12/22/2013

09:15 pm Bug #131 (Closed): new genome have no 'Tracks' button
fixed and closed Daofeng Li
08:43 pm Bug #132 (Closed): default tracks were not be able to be added to genome snapshot
* v30.5
* loading hg19
* in genome snapshot panel, for example the refseq track was listed, but could not be able t...
Daofeng Li

12/21/2013

08:10 am Bug #131 (Resolved): new genome have no 'Tracks' button
Definitely a bug, fixed! Xin Zhou

12/20/2013

11:27 pm Bug #131 (Closed): new genome have no 'Tracks' button
* add new genome from 'add new genome' button
* no 'Tracks' button
* not sure it's a design or a bug
Daofeng Li
02:13 pm Bug #130 (Closed): chromosome sequence display error
chromosome sequence should be printed on chromosome bar at sufficient zoom-in level. During gene set view, zoom in at... Xin Zhou
09:03 am Bug #129 (Rejected): native tracks not shown in public hub
refseq and rmsk_ensemble are so called "native annotation tracks" and they do not belong to Roadmap track hub so they... Xin Zhou
08:57 am Bug #129 (Rejected): native tracks not shown in public hub
* the refseq and rmsk_ensemble didn't shown in public hub
* http://epgg-test.wustl.edu/browser/?genome=hg19&publichu...
Daofeng Li
07:27 am Bug #119 (Resolved): fixedscale and track height probem in json hub
Remaining issues fixed in v30.4.1
* native track height configuration
* track order in the hub
Xin Zhou
07:25 am Bug #123 (Resolved): embedded browser cannot handle hidden tracks
Fixed in v30.4.1 Xin Zhou

12/19/2013

10:23 pm Bug #124 (Closed): Querying for SOX2 but got SOX21 when adding gene set
Fixed and closed. Daofeng Li
10:20 pm Bug #126 (Closed): genome snapshot error
Daofeng Li
10:20 pm Bug #126: genome snapshot error
Fixed and closed. Daofeng Li
10:20 pm Bug #125 (Closed): could not select numerical track from geneplot
Fixed and closed. Daofeng Li
10:18 pm Bug #127 (Closed): could not select track for scatter plot
Fixed and closed. Daofeng Li
08:23 am Bug #125 (Resolved): could not select numerical track from geneplot
Fixed in v30.4.1 Xin Zhou
08:23 am Bug #127 (Resolved): could not select track for scatter plot
Xin Zhou
08:23 am Bug #127: could not select track for scatter plot
Fixed in v30.4.1 Xin Zhou
08:22 am Bug #128 (Rejected): upload a session didn't show the status list
Not a bug it's the way it currently works. Downloaded session does not remember its original session group. Xin Zhou
07:44 am Bug #126 (Resolved): genome snapshot error
Fixed in v30.4.1. Thanks! Xin Zhou

12/18/2013

10:01 pm Bug #128 (Rejected): upload a session didn't show the status list
* use the session id could show the status list
* a bug or a design?
Daofeng Li
09:55 pm Bug #127 (Closed): could not select track for scatter plot
* like issue #125 Daofeng Li
09:51 pm Bug #126 (Closed): genome snapshot error
* the new v30.4 code
* loading roadmap hub
* select genome snapshot -> add tracks
* see error from attached screen...
Daofeng Li
09:48 pm Bug #125 (Closed): could not select numerical track from geneplot
* the new v30.4 code
* after load Roadmap hub, could not add numerical tracks when doing geneplot
Daofeng Li
07:21 am Bug #122: defaultcontent=on behavior differently since v30.2
Yes good point. Now you will need to import Roadmap hub to show these default tracks. I will make it possible for emb... Xin Zhou

12/17/2013

05:40 pm Bug #122: defaultcontent=on behavior differently since v30.2
* this change would affect the embedded browser with default tracks
** like http://cgs.wustl.edu/~xzhou/plugin/1.htm...
Daofeng Li

12/16/2013

10:03 am Bug #122 (Rejected): defaultcontent=on behavior differently since v30.2
This is not an issue, rather a feature change.
There's no default dataset anymore. User must specifically choose a...
Xin Zhou
09:29 am Bug #124 (Resolved): Querying for SOX2 but got SOX21 when adding gene set
Fixed on public browser. Xin Zhou
09:28 am Bug #124 (Closed): Querying for SOX2 but got SOX21 when adding gene set
Add gene set > enter SOX2 > Submit, but got SOX21 instead Xin Zhou

12/15/2013

09:38 am Bug #123 (Closed): embedded browser cannot handle hidden tracks
If a track is set to be hidden by default, the embedding fails Xin Zhou

12/13/2013

11:37 pm Bug #122 (Rejected): defaultcontent=on behavior differently since v30.2
* defaultcontent=on still works
* now if users want to see default tracks, have to use following link:
**http://epg...
Daofeng Li

12/10/2013

01:40 pm Bug #121 (Closed): duplicated display of meta colormap
Daofeng Li
01:22 pm Bug #121 (Resolved): duplicated display of meta colormap
Fixed! Thanks, Xin Zhou
01:08 pm Bug #121 (Closed): duplicated display of meta colormap
* the new v30.2 code at test
* after loading roadmap then load encode, the metadata color map display 2 Sample and 2...
Daofeng Li

12/06/2013

12:55 pm Bug #120 (Closed): custom bed track strand issue
* yes, indeed. Daofeng Li
12:48 pm Bug #120 (Resolved): custom bed track strand issue
fixed on public browser. Xin Zhou
12:18 pm Bug #120 (Closed): custom bed track strand issue
* the strand would display as 'reverse' when the strand was actually a dot '.'
* see Hyungjoo's hub (DMR tracks) fo...
Daofeng Li
07:00 am Bug #119: fixedscale and track height probem in json hub
tracks with "group:1" attribute all share a common scale range and the range is automatic. You cannot apply fixed sca... Xin Zhou
12:30 am Bug #83 (Closed): oversize text in SVG on Firefox
Daofeng Li
12:29 am Bug #116 (Closed): chromHMM tracks cannot be found by "chromhmm" keyword
Daofeng Li
12:29 am washugb v30 release
* We have released v30 of WashU EpiGenome Browser.
h2. Updates:
* custom gene tracks, more details please see: ...
Daofeng Li
12:27 am Bug #119 (Closed): fixedscale and track height probem in json hub
* I am working with Hyungjoo for his hub
* url: http://remc.wustl.edu/hyungjoo/hub_danRer7/hub_Zv9_DNAme.json
* pro...
Daofeng Li

11/29/2013

11:11 pm Feature #118 (New): search auto completion by right clicking from gene tracks
* Is it possible or useful to implement auto completion when we do gene name searching from right clicking of gene/SN... Daofeng Li
11:10 pm Feature #117 (New): add track name to genome snapshot
* I think it would be useful if the track name could be display when generating genome snapshot Daofeng Li
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