Activity
From 10/09/2013 to 11/07/2013
11/07/2013
- 05:36 pm Feature #99 (New): function that move track(s) to top or bottom
- * Is it useful to add a function that move track(s) to top or bottom of canvas?
- 05:36 pm Feature #98 (Closed): multiple selection of tracks
- * Is it possible to support multiple selection of tracks? Like I want to select 2 tracks from different samples or as...
- 05:33 pm Feature #97 (New): user defined track color
- * when changing track colors, is it possible to use other colors? Such as using RGB values or HEX values.
- 05:32 pm Bug #96 (Rejected): location jumping was not accurate
- * in the browser, if I want to jump to a location for example chr1:89443114-89943027
* the browser will give me chr1... - 02:01 pm Bug #95 (Resolved): crashed when loading a hub with wrong metadata vocabulary
- Fixed on public browser. The "Age" term which appears both as parent and child will be rejected. An error message wil...
- 02:00 pm Bug #95 (Closed): crashed when loading a hub with wrong metadata vocabulary
- the vocabulary contains following:
"Age":{
"Age":["1 year", "2 year"],
...
} - 09:32 am Bug #94 (Resolved): Crashed when creating gene set on mm9
- Fixed on public browser.
text descriptions of above items contain quote marks that need to be dealt with. - 09:30 am Bug #94 (Closed): Crashed when creating gene set on mm9
- With following text input:
Mir7675
Mir6387
Mir3066
Mir6937
Mir680
Mir5099
Mir1938
Mir5627
Mir1843a
Mir306... - 08:26 am Bug #92: configuration of category track not 'apply to all' and 'apply background'
- yes.
- 07:34 am Bug #92: configuration of category track not 'apply to all' and 'apply background'
- Do you mean the options "apply to all" and "apply background" are not available for categorical track?
11/06/2013
- 09:43 pm Bug #93 (Closed): new genecode v17 track not work with genome snapshot
- * an error "Uncaught TypeError: Cannot read property 'chr1' of undefined "
- 09:30 pm Bug #92 (Closed): configuration of category track not 'apply to all' and 'apply background'
- * not sure this was a bug or specific design though
11/05/2013
- 07:29 pm Bug #91 (Resolved): crashed when loading bam track
- Fixed in v26.2 on PUBLIC browser, still there on the test for you to see it
the error was because the code was try... - 07:28 pm Bug #91 (Closed): crashed when loading bam track
- try loading a bam track from submission panel, crashes
- 06:26 pm Bug #90 (Resolved): long range track display runs into error
- fixed in v26.2 on PUBLIC browser. Still there on test browser
it's the max score-calculating part that's causing t... - 06:21 pm Bug #90 (Closed): long range track display runs into error
- display a long range track. The track may not be able to show at all, or crashes when turning its display mode.
- 01:26 pm Bug #89: mCRF tracks not recognized
- Did a quick fix and added the error-reporting function, see this:
http://epgg-test.wustl.edu/browser/?genome=hg19&... - 11:53 am Bug #89 (Resolved): mCRF tracks not recognized
- Thanks for the report, following issues have been fixed.
* numerical hub tracks (bigwig or bedgraph) will be show... - 11:16 am Bug #89 (Closed): mCRF tracks not recognized
- When I load my dataHub, some of the mCRF tracks are not recognized by the browser. They are set to mode:"full" to app...
- 07:41 am Bug #88 (Resolved): gene tracks are omitted in restored sessions
- Fixed on public browser. This problem still exists on test browser for you to see it.
BE SURE TO FULLY TEST THE BR... - 07:40 am Bug #88 (Closed): gene tracks are omitted in restored sessions
- save a session with numerical tracks and gene track
restore this session
the gene track is absent from tracks resto...
11/04/2013
- 10:04 pm Bug #86: 2nd panel didn't align top with main panel
- * happens on the iMAC i am using, not on PC
11/01/2013
- 11:05 am washugb v26 release
- We have applied v26 source code to our public servers.
h2. updates:
* SNP information is a long-desired feature...
10/31/2013
- 10:46 am Bug #87 (Resolved): SNP track showing all SNPs to be on reverse strand
- Fixed on public server, still visible on test server
Problem is that SNP track use +/- to indicate SNPs while the br... - 10:44 am Bug #87 (Closed): SNP track showing all SNPs to be on reverse strand
- happens to all SNPs in hg19 SNP track
- 09:39 am Bug #86 (Closed): 2nd panel didn't align top with main panel
- * minor display issue
* see screenshot - 09:35 am Bug #84 (Closed): background in 2nd panel didn't apply to main panel automatically
- Fixed!
- 09:35 am Bug #85 (Closed): rmsk track configuration not available for subfamily tracks
- Fixed
- 08:52 am Bug #84 (Resolved): background in 2nd panel didn't apply to main panel automatically
- Fixed in v25.5, thanks!
- 08:51 am Bug #85 (Resolved): rmsk track configuration not available for subfamily tracks
- fixed on test
in fact they are family-tracks, not subfamilies. Their parent tracks are TE classes.
the bug was be...
10/29/2013
- 10:13 pm Bug #85 (Closed): rmsk track configuration not available for subfamily tracks
- * the new display was not configurable for subfamily tracks
* see screenshot
* (might be not a bug?)
10/28/2013
- 10:44 pm Bug #84 (Closed): background in 2nd panel didn't apply to main panel automatically
- * might be not an issue
* in 2nd panel, if you apply smoothing, the effect will also apply to main panel
* if you a... - 11:07 am Bug #81 (Rejected): lineplot information not contain in 'making url'
- lineplot may be too complicated to fit in URL parameter, its intended use is: you first bring up a numerical track on...
- 10:16 am Bug #83 (Resolved): oversize text in SVG on Firefox
- Fixed on public server. The trouble can still be seen on TEST.
- 10:16 am Bug #83 (Closed): oversize text in SVG on Firefox
- SVG graph displayed on Firefox shows oversize text, as pointed out by a user
- 09:20 am Bug #82 (Resolved): crashed when restoring session
- Solved by allowing the code to tolerate the non-existent tracks and wrong metadata color map term information.
In ... - 09:18 am Bug #82 (Closed): crashed when restoring session
- this happens to sessions that were created a while ago, before September 2013.
10/26/2013
- 11:47 pm Bug #81 (Rejected): lineplot information not contain in 'making url'
- * after making a track to line, making a url
* click the url didn't show the lineplot - 11:45 pm Bug #80 (New): session with lineplot TypeError
- * save a session with lineplot
* reload, TypeError happened - 11:39 pm Bug #79 (New): browser background color
- * sometimes when removed 2nd panel, the main panel will expand, the background color of rightmost part will not be th...
- 11:30 pm Bug #78 (New): 2nd panel lineplot not applied to main panel
- * see screenshot
- 11:25 pm Bug #77 (New): track background color not applied on 2nd panel of line plot
- * see screenshot please
10/25/2013
- 08:36 am Bug #75 (Closed): smoothing window doesn't work well on tracks in secondary panel
- fixed!
- 08:36 am Bug #76 (Closed): circlet view not work at test
- * yeah, seems my web browser cashed the old code, after refresh everything goes well
- 06:59 am Bug #76: circlet view not work at test
- It works for me. Did you refresh page? If the error still happens can you provide some description?
10/24/2013
- 10:50 pm Bug #76 (Closed): circlet view not work at test
- * a TypeError happened
- 11:40 am Bug #75 (Resolved): smoothing window doesn't work well on tracks in secondary panel
- fixed on test browser
- 11:39 am Bug #75 (Closed): smoothing window doesn't work well on tracks in secondary panel
- Apply smoothing window to a track in main panel, open a secondary panel, got error
- 08:49 am Bug #74 (Resolved): circlet plot generates wrong graph
- Has been fixed on public server as soon as the problem was found out.
It is still left unfixed on test server. - 08:48 am Bug #74 (Closed): circlet plot generates wrong graph
- After running circlet view on a long range track, zoom in on the circlet view and find the wrong graph
10/23/2013
- 04:02 pm Bug #73 (Closed): bam track in json hub set to show cause syntax error
- * Use bam track in a json hub, the hub works when all bam tracks set to 'hide' mode
* while any of the bam track set... - 04:00 pm Bug #72 (Closed): error when click 'smooth window' after check 'apply to all'
- FIxed!
- 07:27 am Bug #72 (Resolved): error when click 'smooth window' after check 'apply to all'
- Fixed. Thanks a lot for finding out this bug!
10/22/2013
- 10:57 pm Bug #72 (Closed): error when click 'smooth window' after check 'apply to all'
- * on test server, load hg19 default tracks
* select one of the track, apply smoothing, then check 'apply to all trac...
10/15/2013
- 02:33 pm Bug #71 (Resolved): cannot handle irregularity in custom metadata
- fixed on Public server (but not yet on test). Now the browser captures such thing and complains about it.
- 02:32 pm Bug #71 (Closed): cannot handle irregularity in custom metadata
- Rebecca reported this issue. She has this entry in a metadata vocabulary:
"RNA-seq":["RNA-seq", ... ],
Same ter... - 02:30 pm Bug #66 (Resolved): Save custom metadata vocabulary into session
- fixed in v25
10/10/2013
- 11:23 pm Bug #70 (Closed): right click caused background color disappear
- Closed due to could not reproduce in Firefox and Chrome on other computer.
- 10:44 am washugb v25 release
- * Version 25 features a nice way to display CpG methylation data, and the track background color configuration, and a...
- 12:54 am Bug #70 (Closed): right click caused background color disappear
- * select 'apply to all' change background color of all tracks
* right click on one of the track
* I found the backg...
10/09/2013
- 04:35 pm Bug #69 (Rejected): track name in svg
- * please see screenshot for the position of track names in svg (which overlap the track)
- 02:59 pm Bug #44: long range track display weird in SVG output
- * in V24.3, seems the arc still get black area when opened with illustrator or inkscape
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