Activity

From 10/07/2013 to 11/05/2013

11/05/2013

07:29 pm Bug #91 (Resolved): crashed when loading bam track
Fixed in v26.2 on PUBLIC browser, still there on the test for you to see it
the error was because the code was try...
Xin Zhou
07:28 pm Bug #91 (Closed): crashed when loading bam track
try loading a bam track from submission panel, crashes Xin Zhou
06:26 pm Bug #90 (Resolved): long range track display runs into error
fixed in v26.2 on PUBLIC browser. Still there on test browser
it's the max score-calculating part that's causing t...
Xin Zhou
06:21 pm Bug #90 (Closed): long range track display runs into error
display a long range track. The track may not be able to show at all, or crashes when turning its display mode. Xin Zhou
01:26 pm Bug #89: mCRF tracks not recognized
Did a quick fix and added the error-reporting function, see this:
http://epgg-test.wustl.edu/browser/?genome=hg19&...
Xin Zhou
11:53 am Bug #89 (Resolved): mCRF tracks not recognized
Thanks for the report, following issues have been fixed.
* numerical hub tracks (bigwig or bedgraph) will be show...
Xin Zhou
11:16 am Bug #89 (Closed): mCRF tracks not recognized
When I load my dataHub, some of the mCRF tracks are not recognized by the browser. They are set to mode:"full" to app... Rebecca Lowdon
07:41 am Bug #88 (Resolved): gene tracks are omitted in restored sessions
Fixed on public browser. This problem still exists on test browser for you to see it.
BE SURE TO FULLY TEST THE BR...
Xin Zhou
07:40 am Bug #88 (Closed): gene tracks are omitted in restored sessions
save a session with numerical tracks and gene track
restore this session
the gene track is absent from tracks resto...
Xin Zhou

11/04/2013

10:04 pm Bug #86: 2nd panel didn't align top with main panel
* happens on the iMAC i am using, not on PC Daofeng Li

11/01/2013

11:05 am washugb v26 release
We have applied v26 source code to our public servers.
h2. updates:
* SNP information is a long-desired feature...
Daofeng Li

10/31/2013

10:46 am Bug #87 (Resolved): SNP track showing all SNPs to be on reverse strand
Fixed on public server, still visible on test server
Problem is that SNP track use +/- to indicate SNPs while the br...
Xin Zhou
10:44 am Bug #87 (Closed): SNP track showing all SNPs to be on reverse strand
happens to all SNPs in hg19 SNP track Xin Zhou
09:39 am Bug #86 (Closed): 2nd panel didn't align top with main panel
* minor display issue
* see screenshot
Daofeng Li
09:35 am Bug #84 (Closed): background in 2nd panel didn't apply to main panel automatically
Fixed! Daofeng Li
09:35 am Bug #85 (Closed): rmsk track configuration not available for subfamily tracks
Fixed Daofeng Li
08:52 am Bug #84 (Resolved): background in 2nd panel didn't apply to main panel automatically
Fixed in v25.5, thanks! Xin Zhou
08:51 am Bug #85 (Resolved): rmsk track configuration not available for subfamily tracks
fixed on test
in fact they are family-tracks, not subfamilies. Their parent tracks are TE classes.
the bug was be...
Xin Zhou

10/29/2013

10:13 pm Bug #85 (Closed): rmsk track configuration not available for subfamily tracks
* the new display was not configurable for subfamily tracks
* see screenshot
* (might be not a bug?)
Daofeng Li

10/28/2013

10:44 pm Bug #84 (Closed): background in 2nd panel didn't apply to main panel automatically
* might be not an issue
* in 2nd panel, if you apply smoothing, the effect will also apply to main panel
* if you a...
Daofeng Li
11:07 am Bug #81 (Rejected): lineplot information not contain in 'making url'
lineplot may be too complicated to fit in URL parameter, its intended use is: you first bring up a numerical track on... Xin Zhou
10:16 am Bug #83 (Resolved): oversize text in SVG on Firefox
Fixed on public server. The trouble can still be seen on TEST. Xin Zhou
10:16 am Bug #83 (Closed): oversize text in SVG on Firefox
SVG graph displayed on Firefox shows oversize text, as pointed out by a user Xin Zhou
09:20 am Bug #82 (Resolved): crashed when restoring session
Solved by allowing the code to tolerate the non-existent tracks and wrong metadata color map term information.
In ...
Xin Zhou
09:18 am Bug #82 (Closed): crashed when restoring session
this happens to sessions that were created a while ago, before September 2013. Xin Zhou

10/26/2013

11:47 pm Bug #81 (Rejected): lineplot information not contain in 'making url'
* after making a track to line, making a url
* click the url didn't show the lineplot
Daofeng Li
11:45 pm Bug #80 (New): session with lineplot TypeError
* save a session with lineplot
* reload, TypeError happened
Daofeng Li
11:39 pm Bug #79 (New): browser background color
* sometimes when removed 2nd panel, the main panel will expand, the background color of rightmost part will not be th... Daofeng Li
11:30 pm Bug #78 (New): 2nd panel lineplot not applied to main panel
* see screenshot Daofeng Li
11:25 pm Bug #77 (New): track background color not applied on 2nd panel of line plot
* see screenshot please Daofeng Li

10/25/2013

08:36 am Bug #75 (Closed): smoothing window doesn't work well on tracks in secondary panel
fixed! Daofeng Li
08:36 am Bug #76 (Closed): circlet view not work at test
* yeah, seems my web browser cashed the old code, after refresh everything goes well Daofeng Li
06:59 am Bug #76: circlet view not work at test
It works for me. Did you refresh page? If the error still happens can you provide some description? Xin Zhou

10/24/2013

10:50 pm Bug #76 (Closed): circlet view not work at test
* a TypeError happened Daofeng Li
11:40 am Bug #75 (Resolved): smoothing window doesn't work well on tracks in secondary panel
fixed on test browser Xin Zhou
11:39 am Bug #75 (Closed): smoothing window doesn't work well on tracks in secondary panel
Apply smoothing window to a track in main panel, open a secondary panel, got error Xin Zhou
08:49 am Bug #74 (Resolved): circlet plot generates wrong graph
Has been fixed on public server as soon as the problem was found out.
It is still left unfixed on test server.
Xin Zhou
08:48 am Bug #74 (Closed): circlet plot generates wrong graph
After running circlet view on a long range track, zoom in on the circlet view and find the wrong graph Xin Zhou

10/23/2013

04:02 pm Bug #73 (Closed): bam track in json hub set to show cause syntax error
* Use bam track in a json hub, the hub works when all bam tracks set to 'hide' mode
* while any of the bam track set...
Daofeng Li
04:00 pm Bug #72 (Closed): error when click 'smooth window' after check 'apply to all'
FIxed! Daofeng Li
07:27 am Bug #72 (Resolved): error when click 'smooth window' after check 'apply to all'
Fixed. Thanks a lot for finding out this bug! Xin Zhou

10/22/2013

10:57 pm Bug #72 (Closed): error when click 'smooth window' after check 'apply to all'
* on test server, load hg19 default tracks
* select one of the track, apply smoothing, then check 'apply to all trac...
Daofeng Li

10/15/2013

02:33 pm Bug #71 (Resolved): cannot handle irregularity in custom metadata
fixed on Public server (but not yet on test). Now the browser captures such thing and complains about it. Xin Zhou
02:32 pm Bug #71 (Closed): cannot handle irregularity in custom metadata
Rebecca reported this issue. She has this entry in a metadata vocabulary:
"RNA-seq":["RNA-seq", ... ],
Same ter...
Xin Zhou
02:30 pm Bug #66 (Resolved): Save custom metadata vocabulary into session
fixed in v25 Xin Zhou

10/10/2013

11:23 pm Bug #70 (Closed): right click caused background color disappear
Closed due to could not reproduce in Firefox and Chrome on other computer. Daofeng Li
10:44 am washugb v25 release
* Version 25 features a nice way to display CpG methylation data, and the track background color configuration, and a... Daofeng Li
12:54 am Bug #70 (Closed): right click caused background color disappear
* select 'apply to all' change background color of all tracks
* right click on one of the track
* I found the backg...
Daofeng Li

10/09/2013

04:35 pm Bug #69 (Rejected): track name in svg
* please see screenshot for the position of track names in svg (which overlap the track) Daofeng Li
02:59 pm Bug #44: long range track display weird in SVG output
* in V24.3, seems the arc still get black area when opened with illustrator or inkscape Daofeng Li

10/08/2013

12:08 pm Feature #67 (Closed): change background color
(suggested by Ting)
* Can user set background color? By default the background is white. Maybe someone wants it to...
Daofeng Li

10/07/2013

03:45 pm Bug #2 (Closed): chrome empty canvas
* this issue has been solved with latest version of Google Chrome (Since Oct.2013) Daofeng Li
11:13 am Bug #66 (Closed): Save custom metadata vocabulary into session
Load a datahub containing a custom metadata, save it under session.
Either get "syntax error" on clicking Save but...
Xin Zhou
09:44 am Bug #65 (Resolved): Error rendering RRBS track
fixed in v24.2 Xin Zhou
09:26 am Bug #65 (Closed): Error rendering RRBS track
http://epgg-test.wustl.edu/browser/?genome=hg19&hmtk=GSM621347
this shows a RRBS track. navigate to centromere reg...
Xin Zhou
08:57 am Bug #44: long range track display weird in SVG output
* seems still get abnormal output when open in inscape or illustrator
* please see screenshot below
Daofeng Li
07:29 am Bug #64 (Rejected): json hub not show custom meta colormap
show:['Cell','Assay','Donor','View']
this line should be under "metadata", but not "vocabulary"
Xin Zhou
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