Activity
From 09/22/2013 to 10/21/2013
10/15/2013
- 02:33 pm Bug #71 (Resolved): cannot handle irregularity in custom metadata
- fixed on Public server (but not yet on test). Now the browser captures such thing and complains about it.
- 02:32 pm Bug #71 (Closed): cannot handle irregularity in custom metadata
- Rebecca reported this issue. She has this entry in a metadata vocabulary:
"RNA-seq":["RNA-seq", ... ],
Same ter... - 02:30 pm Bug #66 (Resolved): Save custom metadata vocabulary into session
- fixed in v25
10/10/2013
- 11:23 pm Bug #70 (Closed): right click caused background color disappear
- Closed due to could not reproduce in Firefox and Chrome on other computer.
- 10:44 am washugb v25 release
- * Version 25 features a nice way to display CpG methylation data, and the track background color configuration, and a...
- 12:54 am Bug #70 (Closed): right click caused background color disappear
- * select 'apply to all' change background color of all tracks
* right click on one of the track
* I found the backg...
10/09/2013
- 04:35 pm Bug #69 (Rejected): track name in svg
- * please see screenshot for the position of track names in svg (which overlap the track)
- 02:59 pm Bug #44: long range track display weird in SVG output
- * in V24.3, seems the arc still get black area when opened with illustrator or inkscape
10/08/2013
- 12:08 pm Feature #67 (Closed): change background color
- (suggested by Ting)
* Can user set background color? By default the background is white. Maybe someone wants it to...
10/07/2013
- 03:45 pm Bug #2 (Closed): chrome empty canvas
- * this issue has been solved with latest version of Google Chrome (Since Oct.2013)
- 11:13 am Bug #66 (Closed): Save custom metadata vocabulary into session
- Load a datahub containing a custom metadata, save it under session.
Either get "syntax error" on clicking Save but... - 09:44 am Bug #65 (Resolved): Error rendering RRBS track
- fixed in v24.2
- 09:26 am Bug #65 (Closed): Error rendering RRBS track
- http://epgg-test.wustl.edu/browser/?genome=hg19&hmtk=GSM621347
this shows a RRBS track. navigate to centromere reg... - 08:57 am Bug #44: long range track display weird in SVG output
- * seems still get abnormal output when open in inscape or illustrator
* please see screenshot below
- 07:29 am Bug #64 (Rejected): json hub not show custom meta colormap
- show:['Cell','Assay','Donor','View']
this line should be under "metadata", but not "vocabulary"
10/06/2013
- 09:58 pm Bug #64 (Rejected): json hub not show custom meta colormap
- * might I did it wrong way...
* in this hub: http://cgs.wustl.edu/~dli/remcMethyl.json
* I have show:['Cell','Assay... - 03:15 pm Bug #44 (Resolved): long range track display weird in SVG output
- 03:14 pm Bug #44: long range track display weird in SVG output
- SVG output function has been updated in v24.2, please see if this problem is still there. Also please do extensive te...
10/03/2013
- 09:22 am Revision 84c81131: preparing encode hub 2
- 09:22 am Browser Metadata Revision 84c81131: preparing encode hub 2
- 09:21 am Revision 4bbad921: preparing encode hub
- 09:21 am Browser Metadata Revision 4bbad921: preparing encode hub
10/01/2013
- 11:32 pm Bug #63 (Closed): Gene plot by Google Chart seems not working
- Google API now works. Closed.
- 01:52 pm Bug #63: Gene plot by Google Chart seems not working
- saw the trouble, because google API is not working:
https://www.google.com/jsapi 502 (Bad Gateway) - 01:23 pm Bug #63 (Closed): Gene plot by Google Chart seems not working
- * choose Google Chart for gene plot
* no figures comes out, and the interactive data table was not working either - 08:34 am Support #62 (New): "donor" terms in hg19 metadata
- There's lots of donor IDs in hg19 metadata, please make them more meaningful by adding sex/race/age/health informatio...
09/30/2013
- 09:59 pm Bug #61 (Closed): error embedding browser
- Fixed and closed
- 01:49 pm Bug #61 (Resolved): error embedding browser
- need to comply with the way metadata is declared in datahub: warp the metadata vocabulary inside the "vocabulary" key...
- 01:46 pm Bug #61 (Closed): error embedding browser
- error with embedding in v24.1
http://cgs.wustl.edu/~xzhou/plugin/2.html
09/28/2013
- 09:50 pm Bug #59: error filling contents for facet table of 2nd datahub
- works now
- 05:35 pm Feature #60 (Resolved): "file type" category for custom facet table
- Implemented in v24.1
A "File type" attribute is automatically added to metadata that's either loaded from hub or f... - 02:57 pm Bug #56 (In Progress): error handling with failed custom tracks
- better error handling implemented in v24.1. When a broken track is used, the browser should not crash but print out a...
- 08:20 am Feature #60 (Closed): "file type" category for custom facet table
- when a custom datahub or publichub is loaded, its inner metadata will be rendered into a facet table
it's also des... - 07:30 am Bug #59: error filling contents for facet table of 2nd datahub
- I first found and fixed this bug, then I posted here to log it
which one of the facet tables can't you click?
09/27/2013
- 11:28 pm Bug #59 (Feedback): error filling contents for facet table of 2nd datahub
- the Row and Column metadata header were not clickable
- 11:24 pm Bug #59: error filling contents for facet table of 2nd datahub
- went through your steps, no error found
- 11:23 pm Bug #57 (Closed): Can not import encode data. Just stop at importing...
- Closed. Might be re-opened if happened again.
- 04:11 pm Bug #59 (Resolved): error filling contents for facet table of 2nd datahub
- due to internal mdidx confusion, while loading a datahub
assumed that all coming datahub has mdidx of 1, actually sh... - 04:10 pm Bug #59 (Closed): error filling contents for facet table of 2nd datahub
- on hg19, load the GBM hub. in the "Tracks" panel, a facet table is shown for the GBM hub with tracks registered in it...
- 10:18 am Feature #58 (Closed): make publichubs for ENCODE tracks
- the "Dataset" feature will be retired
Instead the ENCODE tracks will be migrated into "publichub" format, which ma... - 09:52 am Bug #57 (Resolved): Can not import encode data. Just stop at importing...
- Fixed! Thanks,
- 09:47 am Bug #57 (Closed): Can not import encode data. Just stop at importing...
09/26/2013
- 01:50 pm Bug #56 (Closed): error handling with failed custom tracks
- in case of unacceptable custom track, don't crash or abort, but properly handle it and go on with it
- 09:27 am Bug #54: upload bigWig error
- * I think an error message like "your server doesn't support byte range request" would be more helpful
- 09:14 am Feature #55 (New): [System] killing subtleKnife process which had been stucked longer than 10min
- * did some research, finally choose to achieve this by using the killall command
* adding cron jobs to epgg1,2,3, au...
09/25/2013
- 01:28 pm Bug #54 (Rejected): upload bigWig error
- see what's wrong by running bwquery on this bigwig url
- 11:56 am Bug #54 (Rejected): upload bigWig error
- * submit a bigWig url as custom track will get an error
Uncaught TypeError: Cannot read property 'length' of undefin...
09/24/2013
- 07:25 am Bug #53 (Rejected): virus gene info display problem
- 07:25 am Bug #53: virus gene info display problem
- this is not an error
the graph is to indicate the structure of the whole gene
as the virus gene is just one exon, i...
09/23/2013
- 09:34 pm Bug #53: virus gene info display problem
- forget the screenshot..
- 09:33 pm Bug #53 (Rejected): virus gene info display problem
- * if you choose the virus genome, zoom in to base level
* click a gene, there is a blank area in the popup box
- 05:48 pm washugb v24 release
- We have applied version 24 browser today!
h1. New genomes
* Soybean _Glycine max_, version 189
* Common bean _...
09/22/2013
- 02:50 pm Feature #13: Line plot
- progress:
- matplot is now done using canvas
- can add tracks to a matplot, can remove tracks from one
- can show in ...
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