WashUGb Issue Tracking System

10/16/2014

02:33 pm WashU Epigenome Browser Support #236 (New): Roadmap analysis hub crashes

Jing told me she is having trouble loading the Roadmap Epigenomics Analysis data hub. It crashes every time, for a fe... Rebecca Lowdon

09:55 am WashU Epigenome Browser Bug #235 (New): Gene shading feature inconsistent and needs to be made optional

I guess there is a new feature where genes you relocate to are shaded? I can see the value in this, but it needs to b... Rebecca Lowdon

09:44 am WashU Epigenome Browser Support #234 (New): Error in SE paper datahub

I get the following error when I load the SE project datahub:
track MeDIP of BreMyo has unknown term id (HS2294) f... Rebecca Lowdon

10/15/2014

04:55 pm WashU Epigenome Browser Bug #233: dbSNP track crashes

When I zoom in on a region, data appear in "full" mode. Maybe create a warning if there is too much data in a view ra... Rebecca Lowdon

04:53 pm WashU Epigenome Browser Bug #233 (Resolved): dbSNP track crashes

Loaded the dbSNP track on a wide view range. The browser thinks the track loaded, but no data are shown. (image 1)
... Rebecca Lowdon

10:55 am WashU Epigenome Browser Bug #231: load hub and session issue

Re-loading sessions in the same instance also duplicates the Gene set view.
Rebecca Lowdon

10:52 am WashU Epigenome Browser Bug #231: load hub and session issue

Modify this again.
1. opened new browser instance.
2. Load session ID ddSQFzBWvS
3. Click "Link" button for versio... Rebecca Lowdon

10:26 am WashU Epigenome Browser Bug #232 (Resolved): Matplot not working with sessions

What I did:
1. Open new browser session.
2. Sessions app > enter session ID = ddSQFzBWvS and "Retrieve"
3. Enter v... Rebecca Lowdon

10:23 am WashU Epigenome Browser Bug #231: load hub and session issue

Another weird bug. The number of tracks loaded does not make sense. This is what I did:
1. I first loaded my session... Rebecca Lowdon

10/14/2014

02:11 pm WashU Epigenome Browser Support #229 (Closed): IMR90 cell line incorrectly classified

Daofeng Li wrote:
> Thank you very much Rebecca.
> I have moved this term to "Fetal Cells/Tissues -> Fetal Lung".
Rebecca Lowdon

02:11 pm WashU Epigenome Browser Support #228 (Closed): Samples without data

Daofeng Li wrote:
> Hi Rebecca,
>
> We used one metadata vocabulary that some samples were actually used by Encod... Rebecca Lowdon

10/06/2014

10:33 am WashU Epigenome Browser Support #229 (Closed): IMR90 cell line incorrectly classified

I think the IMR90 cell line should not be classified as an ES/iPS-derived cell. It is a primary cell culture: http://... Rebecca Lowdon

10:27 am WashU Epigenome Browser Support #228 (Closed): Samples without data

Why are there so many samples in the Roadmap data hub without associated datasets? Rebecca Lowdon