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Daofeng Li, 07/18/2013 01:07 pm


WashU Epigenome Browser testing procedures
h2. normal mode
h3. navigation
  • heatmap move, pan, zoom in/out
  • track configuration, color/height/mode etc changes
  • metadata heatmap, sort/order/redo sort etc
  • (new) metadata heatmap color change
    h3. apps
  • gene set (New, added Jul/12/2013)
    • adding, removing, renaming list
    • example list, coordinate list
    • bed file (be able to specify/switch column)
    • KEGG pathway
  • genome snapshot
  • svg output
  • scatter plot
  • secondary panel

data/tracks
  • system existed data set load/unload, tracks load/unload
  • custom track, bed/sam/bigwig/bedgraph etc
  • data hub
    h3. secondary panel
  • configuration at this panel should also affect main panel?
  • custom track
    h3. multiple genome panel
  • newly add in July/2013
  • adding new genome panel
    h3. embedding browser
  • newly added in July/2013
  • test examples from http://cgs.wustl.edu/~xzhou/plugin/
  • also http://vizhub.wustl.edu/

data hub
  • track file detection error
  • refresh cache
  • track attributes (show/hide)

metadata tree
  • sorting, moving, fliping
  • add system terms
  • '''create custom meta terms'''

juxtaposing mode
  • under following situation, do same test as above
    • gene set view
    • juxtapose on certain track (system/custom track etc)
      h2. long range
  • loading of tracks
  • change style
  • circlet view

  1. show/hide/rearrange chromosomes
  2. add/remove/configure a wreath track
  3. repeat step 1 with wreath tracks displayed
  4. test if multiple circlet panels are responding well

session and urls

browser compatibility
  • important: '''test above on Firefox and Safari also'''