WashU Epigenome Browser

10001	MEL (Leukemia (K562 analog))	10001	MEL (Leukemia (K562 analog))

10002	ES-E14 (mouse embryonic stem cell line E14)	10002	ES-E14 (mouse embryonic stem cell line E14)

10003	CH12 (B-cell lymphoma (GM12878 analog))	10003	CH12 (B-cell lymphoma (GM12878 analog))

10004	NIH-3T3 (fibroblast)	10004	NIH-3T3 (fibroblast)

10005	Cerebellum	10005	Cerebellum

10006	LgIntestine (Large Intestine)	10006	LgIntestine (Large Intestine)

10007	Patski (Mouse Embryonic Kidney Fibroblast. As described in Lingenfelter et al., 1998 (Nat Genet. 1998 18:212-3) and Yang et al., 2010 (Genome Res.  2010 20:614-22), PATSKI is a female interspecific mouse fibroblast that was derived from the embryonic  kidney of an M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is  always the inactive X. This is an adherent cell line.)	10007	Patski (Mouse Embryonic Kidney Fibroblast. As described in Lingenfelter et al., 1998 (Nat Genet. 1998 18:212-3) and Yang et al., 2010 (Genome Res.  2010 20:614-22), PATSKI is a female interspecific mouse fibroblast that was derived from the embryonic  kidney of an M.spretus x C57BL/6J hybrid mouse such that the C57Bl/6J X chromosome (maternal) is  always the inactive X. This is an adherent cell line.)

10008	GenitalFatPad (Genital Adipose tissue)	10008	GenitalFatPad (Genital Adipose tissue)

10009	Liver	10009	Liver

10010	A20 (B cell lymphoma line derived from a spontaneous reticulum cell neoplasm)	10010	A20 (B cell lymphoma line derived from a spontaneous reticulum cell neoplasm)

10011	Cerebrum	10011	Cerebrum

10012	Spleen	10012	Spleen

10013	B-cell_(CD19+) (B Cell , CD19+)	10013	B-cell_(CD19+) (B Cell , CD19+)

10014	Thymus	10014	Thymus

10015	HeadlessEmbryo (Whole embryos with heads removed)	10015	HeadlessEmbryo (Whole embryos with heads removed)

10016	Heart	10016	Heart

10017	SkMuscle (Skeletal Muscle)	10017	SkMuscle (Skeletal Muscle)

10018	B-cell_(CD43-) (mouse spleen B cells, CD43-,CD11b-)	10018	B-cell_(CD43-) (mouse spleen B cells, CD43-,CD11b-)

10019	WholeBrain (Whole Brain)	10019	WholeBrain (Whole Brain)

10020	416B (myeloid progenitor cells, CD34+)	10020	416B (myeloid progenitor cells, CD34+)

10021	FatPad (Adipose tissue)	10021	FatPad (Adipose tissue)

10022	T-Naive (Naive T cells: CD4+, CD25-)	10022	T-Naive (Naive T cells: CD4+, CD25-)

10023	Lung	10023	Lung

10024	Kidney	10024	Kidney

10025	Erythrobl (Erythroblast, ter119+ cells from liver)	10025	Erythrobl (Erythroblast, ter119+ cells from liver)

10026	G1E (Gata1- erythroid progenitor)	10026	G1E (Gata1- erythroid progenitor)

10027	G1E-ER4 (Gata1 restored erythroid cells, differentiation induced by estradiol (E2))	10027	G1E-ER4 (Gata1 restored erythroid cells, differentiation induced by estradiol (E2))

10028	Megakaryo (Megakaryocyte)	10028	Megakaryo (Megakaryocyte)

10029	10T1/2 (Multipotential cell line that can be converted by 5-azacytidine into three mesodermal stem cell lineages.)	10029	10T1/2 (Multipotential cell line that can be converted by 5-azacytidine into three mesodermal stem cell lineages.)

10030	C2C12 (Myoblast cell line derived from thigh muscle of C3H mice after crush injury)	10030	C2C12 (Myoblast cell line derived from thigh muscle of C3H mice after crush injury)

10031	Cortex	10031	Cortex

10032	BoneMarrow (Bone Marrow)	10032	BoneMarrow (Bone Marrow)

10033	Limb	10033	Limb

10034	BAT (Brown adipocytes tissue)	10034	BAT (Brown adipocytes tissue)

10035	SmIntestine (Small Intestine)	10035	SmIntestine (Small Intestine)

10036	MEF (Mouse Embryonic Fibroblast)	10036	MEF (Mouse Embryonic Fibroblast)

10037	Placenta	10037	Placenta

10038	BMDM (Bone marrow derived macrophage)	10038	BMDM (Bone marrow derived macrophage)

10039	OlfactBulb (Olfactory Bulb)	10039	OlfactBulb (Olfactory Bulb)

10040	Testis	10040	Testis

10041	ES-Bruce4 (mouse embryonic stem cells)	10041	ES-Bruce4 (mouse embryonic stem cells)

10042	MammaryGland (Mammary Gland)	10042	MammaryGland (Mammary Gland)

10043	Duodenum	10043	Duodenum

10044	Adrenal (Adrenal gland)	10044	Adrenal (Adrenal gland)

10045	SubcFatPad (Subcutaneous Adipose tissue)	10045	SubcFatPad (Subcutaneous Adipose tissue)

10046	Stomach	10046	Stomach

10047	Colon	10047	Colon

10048	Ovary	10048	Ovary

10049	J1 ES cells	10002	J1 mouse embryonic stem cell

10050	ATM2E-I13	cell	A-MuLV transformed pro-B cells

10051	ZhBTc4 (Undifferentiated mouse embryonic stem cells)	10051	ZhBTc4 (Undifferentiated mouse embryonic stem cells)

10052	EPC_(CD117+_CD71+_TER119+) (liver fraction CD117+,CD71+,TER119+)	10052	EPC_(CD117+_CD71+_TER119+) (liver fraction CD117+,CD71+,TER119+)

10053	ES-WW6_F1KO (Histone H1c, H1d, H1e triple null mouse embryonic stem cell line derived from ES-WW6 cells.)	10053	ES-WW6_F1KO (Histone H1c, H1d, H1e triple null mouse embryonic stem cell line derived from ES-WW6 cells.)

10054	mG/ER (MEL-GATA-1-ER, This is a mouse suspension cell line derived from MEL cells by stable transfection with a GATA-1-ER fusion protein construct as described by Choe et al., 2003 (Cancer Res 63, 6363-6369, 2003). These cells can be terminally differentiated into mature erythroid cells with Β-estradiol treatment)	10054	mG/ER (MEL-GATA-1-ER, This is a mouse suspension cell line derived from MEL cells by stable transfection with a GATA-1-ER fusion protein construct as described by Choe et al., 2003 (Cancer Res 63, 6363-6369, 2003). These cells can be terminally differentiated into mature erythroid cells with Β-estradiol treatment)

10055	HindlimbBud (embryo hindlimb buds)	10055	HindlimbBud (embryo hindlimb buds)

10056	Retina	10056	Retina

10057	THelper-Activated (Activated primary CD4 effector cells, isolated ex vivo)	10057	THelper-Activated (Activated primary CD4 effector cells, isolated ex vivo)

10058	EPC_(CD117-_CD71+_TER119+) (liver fraction CD117-,CD71+,TER119+)	10058	EPC_(CD117-_CD71+_TER119+) (liver fraction CD117-,CD71+,TER119+)

10059	ES-WW6 (ES-cells isolated from mix of ~20% C57/B6J, ~75% 129/Sv and ~5% SJL strains)	10059	ES-WW6 (ES-cells isolated from mix of ~20% C57/B6J, ~75% 129/Sv and ~5% SJL strains)

10060	Mesoderm (axial somatic and lateral plate mesoderm from eviscerated headless, limbless embryos)	10060	Mesoderm (axial somatic and lateral plate mesoderm from eviscerated headless, limbless embryos)

10061	EPC_(CD117+_CD71-_TER119-) (liver fraction CD117+,CD71-,TER119-)	10061	EPC_(CD117+_CD71-_TER119-) (liver fraction CD117+,CD71-,TER119-)

10062	EPC_(CD117+_CD71+_TER119-) (liver fraction CD117+,CD71+,TER119-)	10062	EPC_(CD117+_CD71+_TER119-) (liver fraction CD117+,CD71+,TER119-)

10063	ForelimbBud (embryo forelimb buds)	10063	ForelimbBud (embryo forelimb buds)

10064	ES-CJ7 (ES-cells were originally isolated from 129S1/SVImJ mice by Swiatek PJ et al. in 1993 (Perinatal lethality and defects in hindbrain development in mice homozygous for a targeted mutation of the zinc finger gene Krox20. Swiatek PJ, Gridley T. Genes Dev. 1993 Nov,7(11):2071-84.))	10064	ES-CJ7 (ES-cells were originally isolated from 129S1/SVImJ mice by Swiatek PJ et al. in 1993 (Perinatal lethality and defects in hindbrain development in mice homozygous for a targeted mutation of the zinc finger gene Krox20. Swiatek PJ, Gridley T. Genes Dev. 1993 Nov,7(11):2071-84.))

10065	TReg-Activated (Activated primary T regulatory cells, isolated ex vivo)	10065	TReg-Activated (Activated primary T regulatory cells, isolated ex vivo)

10066	TReg (Regulatory T cells CD4+,CD25+)	10066	TReg (Regulatory T cells CD4+,CD25+)

10067	3134 (Mammary)	10067	3134 (Mammary)

10068	Fibroblast	10068	Fibroblast

10069	MEP (mouse megakaryocyte erythroid progenitor cells with lineages CD16/32 and CD34-)	10069	MEP (mouse megakaryocyte erythroid progenitor cells with lineages CD16/32 and CD34-)

10070	FVprogenitor (Friend virus infected murine CD34-,CD133-,Kit+,Sca1+ progenitor cells. Strains which can be used to generate the cells must carry the Fv2 sensitive allele (Fv2s). #PROVISIONAL)	10070	FVprogenitor (Friend virus infected murine CD34-,CD133-,Kit+,Sca1+ progenitor cells. Strains which can be used to generate the cells must carry the Fv2 sensitive allele (Fv2s). #PROVISIONAL)

10071	FVLstem (Friend virus infected murine CD34+,CD133+,Kit+,Sca1+ Leukemia stem cells. Strains which can be used to generate the cells must carry the Fv2 sensitive allele (Fv2s). #PROVISIONAL)	10071	FVLstem (Friend virus infected murine CD34+,CD133+,Kit+,Sca1+ Leukemia stem cells. Strains which can be used to generate the cells must carry the Fv2 sensitive allele (Fv2s). #PROVISIONAL)

10072	FrontalLobe (Frontal Lobe)	10072	FrontalLobe (Frontal Lobe)

10073	Bladder (Urinary Bladder)	10073	Bladder (Urinary Bladder)

10074	CNS (Central Nervous System)	10074	CNS (Central Nervous System)

148	Hi-C	longrange assay	High-content genome conformation capture

149	ChIA-PET	longrange assay	Chromatin interaction analysis by paired-end tag sequencing

20001	RnaSeq (Sequencing analysis of RNA expression)	20001	RnaSeq (Sequencing analysis of RNA expression)

20002	Input	20002	Input

20003	H3K4me3	20003	H3K4me3

20004	H3K27me3	20004	H3K27me3

20005	H3K4me1	20005	H3K4me1

20006	H3K36me3	20006	H3K36me3

20007	H3K9me3	20007	H3K9me3

20008	GATA1	20008	GATA1

20009	TAL1	20009	TAL1

20010	GATA2	20010	GATA2

20011	CTCF	20011	CTCF

20012	PAX5	20012	PAX5

20013	Pol2-4H8	20013	Pol2-4H8

20014	H3K79me3	20014	H3K79me3

20015	H3K4me2	20015	H3K4me2

20016	H3ac	20016	H3ac

20017	H3K79me2	20017	H3K79me2

20018	Pol2	20018	Pol2

20019	p300	20019	p300

20020	Myogenin	20020	Myogenin

20021	USF-1	20021	USF-1

20022	MyoD	20022	MyoD

20023	NRSF	20023	NRSF

20024	TCF12	20024	TCF12

20025	CEBPB	20025	CEBPB

20026	FOSL1	20026	FOSL1

20027	Pol2(phosphoS2)	20027	Pol2(phosphoS2)

20028	Max	20028	Max

20029	SRF	20029	SRF

20030	TCF3	20030	TCF3

20031	E2F4	20031	E2F4

20032	MafK	20032	MafK

20033	JunD	20033	JunD

20034	Mxi1	20034	Mxi1

20035	c-Myc	20035	c-Myc

20036	TBP	20036	TBP

20037	c-Myb	20037	c-Myb

20038	BHLHE40	20038	BHLHE40

20039	NELFe	20039	NELFe

20060	DnaseSeq (DNaseI HS Sequencing)	20040	DnaseSeq (DNaseI HS Sequencing)

20040	Rad21	20040	Rad21

20061	DnaseDgf (DNase Digital Footprinting)	20041	DnaseDgf (DNase Digital Footprinting)

20041	GATA-1	20041	GATA-1

20042	FLI1	20042	FLI1

20062	USF2	20042	USF2

20043	HCFC1	20043	HCFC1

20063	SMC3	20043	SMC3

20044	CHD2	20044	CHD2

20064	SIN3A	20044	SIN3A

20045	c-Jun	20045	c-Jun

20065	Nrf2	20045	Nrf2

20046	ZNF384	20046	ZNF384

20047	ZC3H11A	20047	ZC3H11A

20048	ETS1	20048	ETS1

20049	MAZ	20049	MAZ

20050	ZNF-MIZD-CP1	20050	ZNF-MIZD-CP1

20051	CHD1	20051	CHD1

20052	UBF	20052	UBF

20053	COREST	20053	COREST

20054	GCN5	20054	GCN5

20055	ZKSCAN1	20055	ZKSCAN1

20056	H3K27me3B	20056	H3K27me3B

20057	H3K27ac	20057	H3K27ac

20058	H3K36me3B	20058	H3K36me3B

20059	H3K9ac	20059	H3K9ac

30001	Stanford-m (Snyder - Stanford University)	30001	Stanford-m (Snyder - Stanford University)

30002	UW-m (Stamatoyannopoulous - University of Washington)	30002	UW-m (Stamatoyannopoulous - University of Washington)

30003	PSU-m (Hardison - Penn State University)	30003	PSU-m (Hardison - Penn State University)

30004	Caltech-m (Wold - Califonia Institute of Technology)	30004	Caltech-m (Wold - Califonia Institute of Technology)

30005	LICR-m (Ren - Ludwig Institue for Cancer Research)	30005	LICR-m (Ren - Ludwig Institue for Cancer Research)

30006	Yale-m (Weissman - Yale University)	30006	Yale-m (Weissman - Yale University)

30007	CSHL-m (Gingeras - Cold Spring Harbor Laboratory)	30007	CSHL-m (Gingeras - Cold Spring Harbor Laboratory)