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1 8c368a17 Daofeng Li 
wgEncodeBroadHmmGm12878HMM	10:['Transcriptional elongation','#00b050'], 11:['Weak transcribed','#99ff66'], 12:['Polycomb-repressed','#7f7f7f'], 13:['Heterochromatin, low signal','#f5f5f5'], 14:['Repetitive/CNV','#f5f5f5'], 15:['Repetitive/CNV','#f5f5f5'], 1:['Active promoter','#ff0000'], 2:['Weak promoter','#ff6969'], 3:['Inactive/poised promoter','#cf0bc6'], 4:['Strong enhancer','#faca00'], 5:['Strong enhancer','#faca00'], 6:['Weak enhancer','#fffc04'], 7:['Weak enhancer','#fffc04'], 8:['Insulator','#0abefe'], 9:['Transcriptional transition','#00b050']
2 8c368a17 Daofeng Li 
wgEncodeBroadHmmH1hescHMM	10:['Transcriptional elongation','#00b050'], 11:['Weak transcribed','#99ff66'], 12:['Polycomb-repressed','#7f7f7f'], 13:['Heterochromatin, low signal','#f5f5f5'], 14:['Repetitive/CNV','#f5f5f5'], 15:['Repetitive/CNV','#f5f5f5'], 1:['Active promoter','#ff0000'], 2:['Weak promoter','#ff6969'], 3:['Inactive/poised promoter','#cf0bc6'], 4:['Strong enhancer','#faca00'], 5:['Strong enhancer','#faca00'], 6:['Weak enhancer','#fffc04'], 7:['Weak enhancer','#fffc04'], 8:['Insulator','#0abefe'], 9:['Transcriptional transition','#00b050']
3 8c368a17 Daofeng Li 
wgEncodeBroadHmmHepg2HMM	10:['Transcriptional elongation','#00b050'], 11:['Weak transcribed','#99ff66'], 12:['Polycomb-repressed','#7f7f7f'], 13:['Heterochromatin, low signal','#f5f5f5'], 14:['Repetitive/CNV','#f5f5f5'], 15:['Repetitive/CNV','#f5f5f5'], 1:['Active promoter','#ff0000'], 2:['Weak promoter','#ff6969'], 3:['Inactive/poised promoter','#cf0bc6'], 4:['Strong enhancer','#faca00'], 5:['Strong enhancer','#faca00'], 6:['Weak enhancer','#fffc04'], 7:['Weak enhancer','#fffc04'], 8:['Insulator','#0abefe'], 9:['Transcriptional transition','#00b050']
4 8c368a17 Daofeng Li 
wgEncodeBroadHmmHmecHMM	10:['Transcriptional elongation','#00b050'], 11:['Weak transcribed','#99ff66'], 12:['Polycomb-repressed','#7f7f7f'], 13:['Heterochromatin, low signal','#f5f5f5'], 14:['Repetitive/CNV','#f5f5f5'], 15:['Repetitive/CNV','#f5f5f5'], 1:['Active promoter','#ff0000'], 2:['Weak promoter','#ff6969'], 3:['Inactive/poised promoter','#cf0bc6'], 4:['Strong enhancer','#faca00'], 5:['Strong enhancer','#faca00'], 6:['Weak enhancer','#fffc04'], 7:['Weak enhancer','#fffc04'], 8:['Insulator','#0abefe'], 9:['Transcriptional transition','#00b050']
5 8c368a17 Daofeng Li 
wgEncodeBroadHmmHsmmHMM	10:['Transcriptional elongation','#00b050'], 11:['Weak transcribed','#99ff66'], 12:['Polycomb-repressed','#7f7f7f'], 13:['Heterochromatin, low signal','#f5f5f5'], 14:['Repetitive/CNV','#f5f5f5'], 15:['Repetitive/CNV','#f5f5f5'], 1:['Active promoter','#ff0000'], 2:['Weak promoter','#ff6969'], 3:['Inactive/poised promoter','#cf0bc6'], 4:['Strong enhancer','#faca00'], 5:['Strong enhancer','#faca00'], 6:['Weak enhancer','#fffc04'], 7:['Weak enhancer','#fffc04'], 8:['Insulator','#0abefe'], 9:['Transcriptional transition','#00b050']
6 8c368a17 Daofeng Li 
wgEncodeBroadHmmHuvecHMM	10:['Transcriptional elongation','#00b050'], 11:['Weak transcribed','#99ff66'], 12:['Polycomb-repressed','#7f7f7f'], 13:['Heterochromatin, low signal','#f5f5f5'], 14:['Repetitive/CNV','#f5f5f5'], 15:['Repetitive/CNV','#f5f5f5'], 1:['Active promoter','#ff0000'], 2:['Weak promoter','#ff6969'], 3:['Inactive/poised promoter','#cf0bc6'], 4:['Strong enhancer','#faca00'], 5:['Strong enhancer','#faca00'], 6:['Weak enhancer','#fffc04'], 7:['Weak enhancer','#fffc04'], 8:['Insulator','#0abefe'], 9:['Transcriptional transition','#00b050']
7 8c368a17 Daofeng Li 
wgEncodeBroadHmmK562HMM	10:['Transcriptional elongation','#00b050'], 11:['Weak transcribed','#99ff66'], 12:['Polycomb-repressed','#7f7f7f'], 13:['Heterochromatin, low signal','#f5f5f5'], 14:['Repetitive/CNV','#f5f5f5'], 15:['Repetitive/CNV','#f5f5f5'], 1:['Active promoter','#ff0000'], 2:['Weak promoter','#ff6969'], 3:['Inactive/poised promoter','#cf0bc6'], 4:['Strong enhancer','#faca00'], 5:['Strong enhancer','#faca00'], 6:['Weak enhancer','#fffc04'], 7:['Weak enhancer','#fffc04'], 8:['Insulator','#0abefe'], 9:['Transcriptional transition','#00b050']
8 8c368a17 Daofeng Li 
wgEncodeBroadHmmNhekHMM	10:['Transcriptional elongation','#00b050'], 11:['Weak transcribed','#99ff66'], 12:['Polycomb-repressed','#7f7f7f'], 13:['Heterochromatin, low signal','#f5f5f5'], 14:['Repetitive/CNV','#f5f5f5'], 15:['Repetitive/CNV','#f5f5f5'], 1:['Active promoter','#ff0000'], 2:['Weak promoter','#ff6969'], 3:['Inactive/poised promoter','#cf0bc6'], 4:['Strong enhancer','#faca00'], 5:['Strong enhancer','#faca00'], 6:['Weak enhancer','#fffc04'], 7:['Weak enhancer','#fffc04'], 8:['Insulator','#0abefe'], 9:['Transcriptional transition','#00b050']
9 8c368a17 Daofeng Li 
wgEncodeBroadHmmNhlfHMM	10:['Transcriptional elongation','#00b050'], 11:['Weak transcribed','#99ff66'], 12:['Polycomb-repressed','#7f7f7f'], 13:['Heterochromatin, low signal','#f5f5f5'], 14:['Repetitive/CNV','#f5f5f5'], 15:['Repetitive/CNV','#f5f5f5'], 1:['Active promoter','#ff0000'], 2:['Weak promoter','#ff6969'], 3:['Inactive/poised promoter','#cf0bc6'], 4:['Strong enhancer','#faca00'], 5:['Strong enhancer','#faca00'], 6:['Weak enhancer','#fffc04'], 7:['Weak enhancer','#fffc04'], 8:['Insulator','#0abefe'], 9:['Transcriptional transition','#00b050']
10 8c368a17 Daofeng Li 
IMR90_chromhmm_fromhg19	24:['Quiescent_3','#ffffff'], 25:['H3K9ac_low','#e6e6fa'], 20:['Heterochromatin_at_repeats','#afeeee'], 21:['Heterochromatin','#e0ffff'], 22:['Quiescent_1','#ffffff'], 23:['Quiescent_2','#ffffff'], 1:['TSS_poised','#e9967a'], 3:['TSS_active','#ff0000'], 2:['TSS_flanking_more_upstream','#dc143c'], 5:['TSS_flanking_downstream','#b22222'], 4:['TSS_weak','#ff4500'], 7:['Transcription','#00ff00'], 6:['TSS_flanking_more_downstream','#b22222'], 9:['Enhancer-like_Genic','#ff8c00'], 8:['Transcription_weak','#9acd32'], 11:['Enhancer_weak_1','#ffa500'], 10:['Enhancer-like_Genic_(short_genes)','#ff8c00'], 13:['Enhancer_active','#ffa500'], 12:['Enhancer_weak_2','#ffa500'], 15:['Enhancer_poised','#ffff00'], 14:['Enhancer_active_with_weakK4me1_strong_K27ac','#ffa500'], 17:['Repressed_polycomb','#c0c0c0'], 16:['Repressed_polycomb_weak','#dcdcdc'], 19:['Zinc_finger_genes_H3K36me3_K9me3','#4682b4'], 18:['H3K9me3_K27me3','#5f9ea0']
11 71d28e6f Daofeng Li 
rmsk_ensemble	1:['SINE - short interspersed nuclear elements','#cc0000'], 2:['LINE - long interspersed nuclear element','#FF6600'], 3:['LTR - long terminal repeat element','#006600'], 4:['DNA transposon','#4A72E8'], 5:['Simple repeat, micro-satellite','#AB833B'], 7:['Low complexity repeat','#663333'], 6:['Satellite repeat','#660000'], 9:['Other repeats','#488E8E'],8:['RNA repeat','#cc33ff'], 10:['Unknown','#5C5C5C']