• We have released v29 of WashU EpiGenome Browser.

Updates:¶

• access HTTPS resources, including Dropbox, for details please see: http://washugb.blogspot.com/2013/11/v29-1-of-4-access-https-resources.html
• displaying track hubs from UCSC Genome Browser, for details please see: http://washugb.blogspot.com/2013/11/v29-2-of-4-displaying-track-hubs-from.html
• delete custom tracks, for details please see: http://washugb.blogspot.com/2013/11/v29-3-of-4-delete-custom-tracks.html
• the methylC track, for details please see: http://washugb.blogspot.com/2013/11/v29-4-of-4-methylc-track.html

updates¶

• multiple track selection, for details please see: http://washugb.blogspot.com/2013/11/v28-1-of-2-multiple-track-selection.html

• new UI of track configuration, for details please see: http://washugb.blogspot.com/2013/11/v28-2-of-2-track-configuration.html

• We have released v27 of WashU EpiGenome Browser.

Updates:¶

• GENCODE V17 track for the human genome, for details please see: http://washugb.blogspot.com/2013/11/v27-1-of-3-gencode-v17-track-for-human.html
• make screenshot for Genome snapshot, for details please see: http://washugb.blogspot.com/2013/11/v27-2-of-3-make-screenshot-for-genome.html
• custom track listing, for details please see: http://washugb.blogspot.com/2013/11/v27-3-of-3-custom-track-listing.html

We have applied v26 source code to our public servers.

updates:¶

• SNP information is a long-desired feature and we've finally got it on our browser. Credit goes to UCSC Genome Browser for making SNP information nicely curated and easily accessible. For details, please see http://washugb.blogspot.com/2013/10/v26-1-of-3-snp-track.html
• A minor update to RepeatMasker tracks has been made, which is the ability to grade repetitive elements by their Smith-Waterman alignment scores. For details please see http://washugb.blogspot.com/2013/10/v26-2-of-3-repeatmasker-tracks.html
• A minor improvement has been made that allows you to smooth the graph of a quantitative track using window mean values. For details please see http://washugb.blogspot.com/2013/10/v26-3-of-3-smoothing-curves.html

• Version 25 features a nice way to display CpG methylation data, and the track background color configuration, and a background color could also be applied to tracks now. For details please see: http://washugb.blogspot.com/2013/10/v25-new-display-methods-for-methylc-seq.html

We have applied version 24 browser today!

New genomes¶

• Soybean Glycine max, version 189
• Common bean Phaseolus vulgaris, version 218
• Chinese cabbage Brassica rapa, version 1.1
• Autographa californica nucleopolyhedrovirus (no version info)

JSON datahub format¶

• for details please see: http://washugb.blogspot.com/2013/09/v24-2-of-3-json-datahub-format.html

facet panel¶

• for detail please see: http://washugb.blogspot.com/2013/09/v24-3-of-3-facet-panel.html

We have applied version 23 of washugb code to our public servers today.

Updates:¶

1. custom categorical track was supported now, for details, see official blog post: http://washugb.blogspot.com/2013/08/v23-custom-categorical-track.html
2. mouse genome mm10 added

We have applied v22 source code to our public servers.

updates:¶

Please see our blog plots for details:

1. v22 (1 of 3): call super enhancer using ROSE: http://washugb.blogspot.com/2013/07/v22-1-of-3-call-super-enhancer-using.html
2. v22 (2 of 3): public datahubs: http://washugb.blogspot.com/2013/07/v22-2-of-3-public-datahubs.html
3. v22 (3 of 3): better track search, and information display: http://washugb.blogspot.com/2013/07/v22-3-of-3-better-track-search-and.html

We just applied the v21 source code to our public servers.

Function updates:¶

1. the new 'Gene Set' under 'Apps'
2. add support for customized bed-like files
3. all utils (gene set view, gene plot, scatter plot) related to a list of genes could be operated from here
4. the gene list could be added to genome snapshot
5. version code added at top-left corner

Data updates:¶

1. we updated the default tracks of Zebrafish (danRer7) and meta data
2. the danRer7 tracks were collected by HyungJoo Lee from Wang Lab

See the official blog post for details please:
v21: Creating and managing multiple gene sets: http://washugb.blogspot.com/2013/07/v21-creating-and-managing-multiple-gene.html