Activity
From 11/22/2013 to 12/21/2013
12/21/2013
- 08:10 am Bug #131 (Resolved): new genome have no 'Tracks' button
- Definitely a bug, fixed!
12/20/2013
- 11:27 pm Bug #131 (Closed): new genome have no 'Tracks' button
- * add new genome from 'add new genome' button
* no 'Tracks' button
* not sure it's a design or a bug - 02:13 pm Bug #130 (Closed): chromosome sequence display error
- chromosome sequence should be printed on chromosome bar at sufficient zoom-in level. During gene set view, zoom in at...
- 09:03 am Bug #129 (Rejected): native tracks not shown in public hub
- refseq and rmsk_ensemble are so called "native annotation tracks" and they do not belong to Roadmap track hub so they...
- 08:57 am Bug #129 (Rejected): native tracks not shown in public hub
- * the refseq and rmsk_ensemble didn't shown in public hub
* http://epgg-test.wustl.edu/browser/?genome=hg19&publichu... - 07:27 am Bug #119 (Resolved): fixedscale and track height probem in json hub
- Remaining issues fixed in v30.4.1
* native track height configuration
* track order in the hub - 07:25 am Bug #123 (Resolved): embedded browser cannot handle hidden tracks
- Fixed in v30.4.1
12/19/2013
- 10:23 pm Bug #124 (Closed): Querying for SOX2 but got SOX21 when adding gene set
- Fixed and closed.
- 10:20 pm Bug #126 (Closed): genome snapshot error
- 10:20 pm Bug #126: genome snapshot error
- Fixed and closed.
- 10:20 pm Bug #125 (Closed): could not select numerical track from geneplot
- Fixed and closed.
- 10:18 pm Bug #127 (Closed): could not select track for scatter plot
- Fixed and closed.
- 08:23 am Bug #125 (Resolved): could not select numerical track from geneplot
- Fixed in v30.4.1
- 08:23 am Bug #127 (Resolved): could not select track for scatter plot
- 08:23 am Bug #127: could not select track for scatter plot
- Fixed in v30.4.1
- 08:22 am Bug #128 (Rejected): upload a session didn't show the status list
- Not a bug it's the way it currently works. Downloaded session does not remember its original session group.
- 07:44 am Bug #126 (Resolved): genome snapshot error
- Fixed in v30.4.1. Thanks!
12/18/2013
- 10:01 pm Bug #128 (Rejected): upload a session didn't show the status list
- * use the session id could show the status list
* a bug or a design? - 09:55 pm Bug #127 (Closed): could not select track for scatter plot
- * like issue #125
- 09:51 pm Bug #126 (Closed): genome snapshot error
- * the new v30.4 code
* loading roadmap hub
* select genome snapshot -> add tracks
* see error from attached screen... - 09:48 pm Bug #125 (Closed): could not select numerical track from geneplot
- * the new v30.4 code
* after load Roadmap hub, could not add numerical tracks when doing geneplot - 07:21 am Bug #122: defaultcontent=on behavior differently since v30.2
- Yes good point. Now you will need to import Roadmap hub to show these default tracks. I will make it possible for emb...
12/17/2013
- 05:40 pm Bug #122: defaultcontent=on behavior differently since v30.2
- * this change would affect the embedded browser with default tracks
** like http://cgs.wustl.edu/~xzhou/plugin/1.htm...
12/16/2013
- 10:03 am Bug #122 (Rejected): defaultcontent=on behavior differently since v30.2
- This is not an issue, rather a feature change.
There's no default dataset anymore. User must specifically choose a... - 09:29 am Bug #124 (Resolved): Querying for SOX2 but got SOX21 when adding gene set
- Fixed on public browser.
- 09:28 am Bug #124 (Closed): Querying for SOX2 but got SOX21 when adding gene set
- Add gene set > enter SOX2 > Submit, but got SOX21 instead
12/15/2013
- 09:38 am Bug #123 (Closed): embedded browser cannot handle hidden tracks
- If a track is set to be hidden by default, the embedding fails
12/13/2013
- 11:37 pm Bug #122 (Rejected): defaultcontent=on behavior differently since v30.2
- * defaultcontent=on still works
* now if users want to see default tracks, have to use following link:
**http://epg...
12/10/2013
- 01:40 pm Bug #121 (Closed): duplicated display of meta colormap
- 01:22 pm Bug #121 (Resolved): duplicated display of meta colormap
- Fixed! Thanks,
- 01:08 pm Bug #121 (Closed): duplicated display of meta colormap
- * the new v30.2 code at test
* after loading roadmap then load encode, the metadata color map display 2 Sample and 2...
12/06/2013
- 12:55 pm Bug #120 (Closed): custom bed track strand issue
- * yes, indeed.
- 12:48 pm Bug #120 (Resolved): custom bed track strand issue
- fixed on public browser.
- 12:18 pm Bug #120 (Closed): custom bed track strand issue
- * the strand would display as 'reverse' when the strand was actually a dot '.'
* see Hyungjoo's hub (DMR tracks) fo... - 07:00 am Bug #119: fixedscale and track height probem in json hub
- tracks with "group:1" attribute all share a common scale range and the range is automatic. You cannot apply fixed sca...
- 12:30 am Bug #83 (Closed): oversize text in SVG on Firefox
- 12:29 am Bug #116 (Closed): chromHMM tracks cannot be found by "chromhmm" keyword
- 12:29 am washugb v30 release
- * We have released v30 of WashU EpiGenome Browser.
h2. Updates:
* custom gene tracks, more details please see: ... - 12:27 am Bug #119 (Closed): fixedscale and track height probem in json hub
- * I am working with Hyungjoo for his hub
* url: http://remc.wustl.edu/hyungjoo/hub_danRer7/hub_Zv9_DNAme.json
* pro...
11/29/2013
- 11:11 pm Feature #118 (New): search auto completion by right clicking from gene tracks
- * Is it possible or useful to implement auto completion when we do gene name searching from right clicking of gene/SN...
- 11:10 pm Feature #117 (New): add track name to genome snapshot
- * I think it would be useful if the track name could be display when generating genome snapshot
11/24/2013
- 09:17 pm Bug #112 (Closed): bam display as 'density' when specified as 'full' in UCSC hub
- 09:13 pm Bug #113 (Closed): retrieve session which contains USCS hub error
- fixed and closed
- 09:12 pm Bug #116: chromHMM tracks cannot be found by "chromhmm" keyword
- * that's a useful update
* tested worked.
* so the search will perform against not just track name, also meta data ... - 05:15 pm washugb v29 release
- * We have released v29 of WashU EpiGenome Browser.
h2. Updates:
* access HTTPS resources, including Dropbox, fo... - 03:44 pm Bug #114: Cannot read property 'cigar' of undefined
- no clue...
- 03:42 pm Bug #113 (Resolved): retrieve session which contains USCS hub error
- fixed on public server
- 03:25 pm Bug #111: Tracks disappear when using config panel
- Sorry I just figured out the trouble. You must have used this in declaring the track in your hub:
height:"20",
... - 01:47 pm Bug #112 (Resolved): bam display as 'density' when specified as 'full' in UCSC hub
- fixed on public server
- 11:55 am Bug #116 (Resolved): chromHMM tracks cannot be found by "chromhmm" keyword
- fixed in v29 on public browser
- 11:55 am Bug #116: chromHMM tracks cannot be found by "chromhmm" keyword
- fixed in v29 on public browser
- 10:22 am Bug #116 (Closed): chromHMM tracks cannot be found by "chromhmm" keyword
- in hg19, search tracks by keyword "chromhmm" and found nothing
"chromhmm" should match a metadata term and should tu...
11/23/2013
- 04:19 pm Bug #115: tracks do not relocate and some disappear in GSV
- When I load a new browser session (not from a saved session ID, but start over completely), then load the gene list, ...
- 04:07 pm Bug #115 (New): tracks do not relocate and some disappear in GSV
- Loaded my browser session ID: L607cgtoI3
Then loaded attached regions into GSV via copy-paste.
Adjust to view "gen...
11/22/2013
- 09:31 pm Bug #114 (Rejected): Cannot read property 'cigar' of undefined
- * use the UCSC hub: http://vizhub.wustl.edu/hubSample/hg19/hg19/trackDb.txt
* open a 2nd panel
* switch to full
* ... - 09:24 pm Bug #113 (Closed): retrieve session which contains USCS hub error
- * session id: LvPDnsxtlZ (public hg19)
* use the UCSC hub mentioned before, save session, retrieve, an error happene... - 09:20 pm Bug #112 (Closed): bam display as 'density' when specified as 'full' in UCSC hub
- * minor issue
* when submit an UCSC hub, I have define the bam tracks display as 'full' mode
* the browser actually...
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