Activity
From 10/02/2013 to 10/31/2013
10/31/2013
- 10:46 am Bug #87 (Resolved): SNP track showing all SNPs to be on reverse strand
- Fixed on public server, still visible on test server
Problem is that SNP track use +/- to indicate SNPs while the br... - 10:44 am Bug #87 (Closed): SNP track showing all SNPs to be on reverse strand
- happens to all SNPs in hg19 SNP track
- 09:39 am Bug #86 (Closed): 2nd panel didn't align top with main panel
- * minor display issue
* see screenshot - 09:35 am Bug #84 (Closed): background in 2nd panel didn't apply to main panel automatically
- Fixed!
- 09:35 am Bug #85 (Closed): rmsk track configuration not available for subfamily tracks
- Fixed
- 08:52 am Bug #84 (Resolved): background in 2nd panel didn't apply to main panel automatically
- Fixed in v25.5, thanks!
- 08:51 am Bug #85 (Resolved): rmsk track configuration not available for subfamily tracks
- fixed on test
in fact they are family-tracks, not subfamilies. Their parent tracks are TE classes.
the bug was be...
10/29/2013
- 10:13 pm Bug #85 (Closed): rmsk track configuration not available for subfamily tracks
- * the new display was not configurable for subfamily tracks
* see screenshot
* (might be not a bug?)
10/28/2013
- 10:44 pm Bug #84 (Closed): background in 2nd panel didn't apply to main panel automatically
- * might be not an issue
* in 2nd panel, if you apply smoothing, the effect will also apply to main panel
* if you a... - 11:07 am Bug #81 (Rejected): lineplot information not contain in 'making url'
- lineplot may be too complicated to fit in URL parameter, its intended use is: you first bring up a numerical track on...
- 10:16 am Bug #83 (Resolved): oversize text in SVG on Firefox
- Fixed on public server. The trouble can still be seen on TEST.
- 10:16 am Bug #83 (Closed): oversize text in SVG on Firefox
- SVG graph displayed on Firefox shows oversize text, as pointed out by a user
- 09:20 am Bug #82 (Resolved): crashed when restoring session
- Solved by allowing the code to tolerate the non-existent tracks and wrong metadata color map term information.
In ... - 09:18 am Bug #82 (Closed): crashed when restoring session
- this happens to sessions that were created a while ago, before September 2013.
10/26/2013
- 11:47 pm Bug #81 (Rejected): lineplot information not contain in 'making url'
- * after making a track to line, making a url
* click the url didn't show the lineplot - 11:45 pm Bug #80 (New): session with lineplot TypeError
- * save a session with lineplot
* reload, TypeError happened - 11:39 pm Bug #79 (New): browser background color
- * sometimes when removed 2nd panel, the main panel will expand, the background color of rightmost part will not be th...
- 11:30 pm Bug #78 (New): 2nd panel lineplot not applied to main panel
- * see screenshot
- 11:25 pm Bug #77 (New): track background color not applied on 2nd panel of line plot
- * see screenshot please
10/25/2013
- 08:36 am Bug #75 (Closed): smoothing window doesn't work well on tracks in secondary panel
- fixed!
- 08:36 am Bug #76 (Closed): circlet view not work at test
- * yeah, seems my web browser cashed the old code, after refresh everything goes well
- 06:59 am Bug #76: circlet view not work at test
- It works for me. Did you refresh page? If the error still happens can you provide some description?
10/24/2013
- 10:50 pm Bug #76 (Closed): circlet view not work at test
- * a TypeError happened
- 11:40 am Bug #75 (Resolved): smoothing window doesn't work well on tracks in secondary panel
- fixed on test browser
- 11:39 am Bug #75 (Closed): smoothing window doesn't work well on tracks in secondary panel
- Apply smoothing window to a track in main panel, open a secondary panel, got error
- 08:49 am Bug #74 (Resolved): circlet plot generates wrong graph
- Has been fixed on public server as soon as the problem was found out.
It is still left unfixed on test server. - 08:48 am Bug #74 (Closed): circlet plot generates wrong graph
- After running circlet view on a long range track, zoom in on the circlet view and find the wrong graph
10/23/2013
- 04:02 pm Bug #73 (Closed): bam track in json hub set to show cause syntax error
- * Use bam track in a json hub, the hub works when all bam tracks set to 'hide' mode
* while any of the bam track set... - 04:00 pm Bug #72 (Closed): error when click 'smooth window' after check 'apply to all'
- FIxed!
- 07:27 am Bug #72 (Resolved): error when click 'smooth window' after check 'apply to all'
- Fixed. Thanks a lot for finding out this bug!
10/22/2013
- 10:57 pm Bug #72 (Closed): error when click 'smooth window' after check 'apply to all'
- * on test server, load hg19 default tracks
* select one of the track, apply smoothing, then check 'apply to all trac...
10/15/2013
- 02:33 pm Bug #71 (Resolved): cannot handle irregularity in custom metadata
- fixed on Public server (but not yet on test). Now the browser captures such thing and complains about it.
- 02:32 pm Bug #71 (Closed): cannot handle irregularity in custom metadata
- Rebecca reported this issue. She has this entry in a metadata vocabulary:
"RNA-seq":["RNA-seq", ... ],
Same ter... - 02:30 pm Bug #66 (Resolved): Save custom metadata vocabulary into session
- fixed in v25
10/10/2013
- 11:23 pm Bug #70 (Closed): right click caused background color disappear
- Closed due to could not reproduce in Firefox and Chrome on other computer.
- 10:44 am washugb v25 release
- * Version 25 features a nice way to display CpG methylation data, and the track background color configuration, and a...
- 12:54 am Bug #70 (Closed): right click caused background color disappear
- * select 'apply to all' change background color of all tracks
* right click on one of the track
* I found the backg...
10/09/2013
- 04:35 pm Bug #69 (Rejected): track name in svg
- * please see screenshot for the position of track names in svg (which overlap the track)
- 02:59 pm Bug #44: long range track display weird in SVG output
- * in V24.3, seems the arc still get black area when opened with illustrator or inkscape
10/08/2013
- 12:08 pm Feature #67 (Closed): change background color
- (suggested by Ting)
* Can user set background color? By default the background is white. Maybe someone wants it to...
10/07/2013
- 03:45 pm Bug #2 (Closed): chrome empty canvas
- * this issue has been solved with latest version of Google Chrome (Since Oct.2013)
- 11:13 am Bug #66 (Closed): Save custom metadata vocabulary into session
- Load a datahub containing a custom metadata, save it under session.
Either get "syntax error" on clicking Save but... - 09:44 am Bug #65 (Resolved): Error rendering RRBS track
- fixed in v24.2
- 09:26 am Bug #65 (Closed): Error rendering RRBS track
- http://epgg-test.wustl.edu/browser/?genome=hg19&hmtk=GSM621347
this shows a RRBS track. navigate to centromere reg... - 08:57 am Bug #44: long range track display weird in SVG output
- * seems still get abnormal output when open in inscape or illustrator
* please see screenshot below
- 07:29 am Bug #64 (Rejected): json hub not show custom meta colormap
- show:['Cell','Assay','Donor','View']
this line should be under "metadata", but not "vocabulary"
10/06/2013
- 09:58 pm Bug #64 (Rejected): json hub not show custom meta colormap
- * might I did it wrong way...
* in this hub: http://cgs.wustl.edu/~dli/remcMethyl.json
* I have show:['Cell','Assay... - 03:15 pm Bug #44 (Resolved): long range track display weird in SVG output
- 03:14 pm Bug #44: long range track display weird in SVG output
- SVG output function has been updated in v24.2, please see if this problem is still there. Also please do extensive te...
10/03/2013
- 09:22 am Browser Metadata Revision 84c81131: preparing encode hub 2
- 09:22 am Revision 84c81131: preparing encode hub 2
- 09:21 am Revision 4bbad921: preparing encode hub
- 09:21 am Browser Metadata Revision 4bbad921: preparing encode hub
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