Activity

From 09/29/2013 to 10/28/2013

10/28/2013

10:44 pm Bug #84 (Closed): background in 2nd panel didn't apply to main panel automatically
* might be not an issue
* in 2nd panel, if you apply smoothing, the effect will also apply to main panel
* if you a...
Daofeng Li
11:07 am Bug #81 (Rejected): lineplot information not contain in 'making url'
lineplot may be too complicated to fit in URL parameter, its intended use is: you first bring up a numerical track on... Xin Zhou
10:16 am Bug #83 (Resolved): oversize text in SVG on Firefox
Fixed on public server. The trouble can still be seen on TEST. Xin Zhou
10:16 am Bug #83 (Closed): oversize text in SVG on Firefox
SVG graph displayed on Firefox shows oversize text, as pointed out by a user Xin Zhou
09:20 am Bug #82 (Resolved): crashed when restoring session
Solved by allowing the code to tolerate the non-existent tracks and wrong metadata color map term information.
In ...
Xin Zhou
09:18 am Bug #82 (Closed): crashed when restoring session
this happens to sessions that were created a while ago, before September 2013. Xin Zhou

10/26/2013

11:47 pm Bug #81 (Rejected): lineplot information not contain in 'making url'
* after making a track to line, making a url
* click the url didn't show the lineplot
Daofeng Li
11:45 pm Bug #80 (New): session with lineplot TypeError
* save a session with lineplot
* reload, TypeError happened
Daofeng Li
11:39 pm Bug #79 (New): browser background color
* sometimes when removed 2nd panel, the main panel will expand, the background color of rightmost part will not be th... Daofeng Li
11:30 pm Bug #78 (New): 2nd panel lineplot not applied to main panel
* see screenshot Daofeng Li
11:25 pm Bug #77 (New): track background color not applied on 2nd panel of line plot
* see screenshot please Daofeng Li

10/25/2013

08:36 am Bug #75 (Closed): smoothing window doesn't work well on tracks in secondary panel
fixed! Daofeng Li
08:36 am Bug #76 (Closed): circlet view not work at test
* yeah, seems my web browser cashed the old code, after refresh everything goes well Daofeng Li
06:59 am Bug #76: circlet view not work at test
It works for me. Did you refresh page? If the error still happens can you provide some description? Xin Zhou

10/24/2013

10:50 pm Bug #76 (Closed): circlet view not work at test
* a TypeError happened Daofeng Li
11:40 am Bug #75 (Resolved): smoothing window doesn't work well on tracks in secondary panel
fixed on test browser Xin Zhou
11:39 am Bug #75 (Closed): smoothing window doesn't work well on tracks in secondary panel
Apply smoothing window to a track in main panel, open a secondary panel, got error Xin Zhou
08:49 am Bug #74 (Resolved): circlet plot generates wrong graph
Has been fixed on public server as soon as the problem was found out.
It is still left unfixed on test server.
Xin Zhou
08:48 am Bug #74 (Closed): circlet plot generates wrong graph
After running circlet view on a long range track, zoom in on the circlet view and find the wrong graph Xin Zhou

10/23/2013

04:02 pm Bug #73 (Closed): bam track in json hub set to show cause syntax error
* Use bam track in a json hub, the hub works when all bam tracks set to 'hide' mode
* while any of the bam track set...
Daofeng Li
04:00 pm Bug #72 (Closed): error when click 'smooth window' after check 'apply to all'
FIxed! Daofeng Li
07:27 am Bug #72 (Resolved): error when click 'smooth window' after check 'apply to all'
Fixed. Thanks a lot for finding out this bug! Xin Zhou

10/22/2013

10:57 pm Bug #72 (Closed): error when click 'smooth window' after check 'apply to all'
* on test server, load hg19 default tracks
* select one of the track, apply smoothing, then check 'apply to all trac...
Daofeng Li

10/15/2013

02:33 pm Bug #71 (Resolved): cannot handle irregularity in custom metadata
fixed on Public server (but not yet on test). Now the browser captures such thing and complains about it. Xin Zhou
02:32 pm Bug #71 (Closed): cannot handle irregularity in custom metadata
Rebecca reported this issue. She has this entry in a metadata vocabulary:
"RNA-seq":["RNA-seq", ... ],
Same ter...
Xin Zhou
02:30 pm Bug #66 (Resolved): Save custom metadata vocabulary into session
fixed in v25 Xin Zhou

10/10/2013

11:23 pm Bug #70 (Closed): right click caused background color disappear
Closed due to could not reproduce in Firefox and Chrome on other computer. Daofeng Li
10:44 am washugb v25 release
* Version 25 features a nice way to display CpG methylation data, and the track background color configuration, and a... Daofeng Li
12:54 am Bug #70 (Closed): right click caused background color disappear
* select 'apply to all' change background color of all tracks
* right click on one of the track
* I found the backg...
Daofeng Li

10/09/2013

04:35 pm Bug #69 (Rejected): track name in svg
* please see screenshot for the position of track names in svg (which overlap the track) Daofeng Li
02:59 pm Bug #44: long range track display weird in SVG output
* in V24.3, seems the arc still get black area when opened with illustrator or inkscape Daofeng Li

10/08/2013

12:08 pm Feature #67 (Closed): change background color
(suggested by Ting)
* Can user set background color? By default the background is white. Maybe someone wants it to...
Daofeng Li

10/07/2013

03:45 pm Bug #2 (Closed): chrome empty canvas
* this issue has been solved with latest version of Google Chrome (Since Oct.2013) Daofeng Li
11:13 am Bug #66 (Closed): Save custom metadata vocabulary into session
Load a datahub containing a custom metadata, save it under session.
Either get "syntax error" on clicking Save but...
Xin Zhou
09:44 am Bug #65 (Resolved): Error rendering RRBS track
fixed in v24.2 Xin Zhou
09:26 am Bug #65 (Closed): Error rendering RRBS track
http://epgg-test.wustl.edu/browser/?genome=hg19&hmtk=GSM621347
this shows a RRBS track. navigate to centromere reg...
Xin Zhou
08:57 am Bug #44: long range track display weird in SVG output
* seems still get abnormal output when open in inscape or illustrator
* please see screenshot below
Daofeng Li
07:29 am Bug #64 (Rejected): json hub not show custom meta colormap
show:['Cell','Assay','Donor','View']
this line should be under "metadata", but not "vocabulary"
Xin Zhou

10/06/2013

09:58 pm Bug #64 (Rejected): json hub not show custom meta colormap
* might I did it wrong way...
* in this hub: http://cgs.wustl.edu/~dli/remcMethyl.json
* I have show:['Cell','Assay...
Daofeng Li
03:15 pm Bug #44 (Resolved): long range track display weird in SVG output
Xin Zhou
03:14 pm Bug #44: long range track display weird in SVG output
SVG output function has been updated in v24.2, please see if this problem is still there. Also please do extensive te... Xin Zhou

10/03/2013

09:22 am Revision 84c81131: preparing encode hub 2
Daofeng Li
09:22 am Browser Metadata Revision 84c81131: preparing encode hub 2
Daofeng Li
09:21 am Revision 4bbad921: preparing encode hub
Daofeng Li
09:21 am Browser Metadata Revision 4bbad921: preparing encode hub
Daofeng Li

10/01/2013

11:32 pm Bug #63 (Closed): Gene plot by Google Chart seems not working
Google API now works. Closed. Daofeng Li
01:52 pm Bug #63: Gene plot by Google Chart seems not working
saw the trouble, because google API is not working:
https://www.google.com/jsapi 502 (Bad Gateway)
Xin Zhou
01:23 pm Bug #63 (Closed): Gene plot by Google Chart seems not working
* choose Google Chart for gene plot
* no figures comes out, and the interactive data table was not working either
Daofeng Li
08:34 am Support #62 (New): "donor" terms in hg19 metadata
There's lots of donor IDs in hg19 metadata, please make them more meaningful by adding sex/race/age/health informatio... Xin Zhou

09/30/2013

09:59 pm Bug #61 (Closed): error embedding browser
Fixed and closed Daofeng Li
01:49 pm Bug #61 (Resolved): error embedding browser
need to comply with the way metadata is declared in datahub: warp the metadata vocabulary inside the "vocabulary" key... Xin Zhou
01:46 pm Bug #61 (Closed): error embedding browser
error with embedding in v24.1
http://cgs.wustl.edu/~xzhou/plugin/2.html
Xin Zhou
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