Activity

From 08/02/2013 to 08/31/2013

08/25/2013

05:22 pm Feature #36: add Brassica Rapa genome
forget the screenshot... Daofeng Li
05:20 pm Feature #36: add Brassica Rapa genome
added to test server.
While I got a Json syntax error when using chromosome to jump to another location.
the er...
Daofeng Li

08/24/2013

03:06 pm Feature #36: add Brassica Rapa genome
Have problem with downloading of the data.
Tried registration few times, was not able to access the data.
Daofeng Li
09:15 am Feature #35: add common bean genome
fixed Daofeng Li
04:01 am Feature #36 (Closed): add Brassica Rapa genome
http://brassicadb.org/brad/downloadOverview.php Xin Zhou
03:58 am Feature #35: add common bean genome
use "common bean" instead of "commonbean" for species name
Pay attention to spelling!
Xin Zhou

08/23/2013

10:02 pm Feature #34: add soybean genome
Thanks, fixed! Daofeng Li
10:02 pm Feature #35: add common bean genome
Thanks, fixed! Daofeng Li
09:27 pm Feature #35: add common bean genome
same problem as soybean genome, please remove trailing comma from "defaultScaffold" Xin Zhou
09:07 pm Feature #34: add soybean genome
thanks a lot!
Scaffold listing is not shown (click blue coordinate button, choose "zoom into a chrom"), please rem...
Xin Zhou

08/22/2013

12:30 pm Feature #35: add common bean genome
added to test Daofeng Li
12:27 pm Revision 52e54a06: add soybean and commonbean, fix mm10 decor link
Daofeng Li
12:27 pm Browser Metadata Revision 52e54a06: add soybean and commonbean, fix mm10 decor link
Daofeng Li

08/21/2013

06:17 pm Feature #34: add soybean genome
* soybean added to test.
* Could you please review and let me know your suggestions?
Daofeng Li
08:36 am Feature #35 (Closed): add common bean genome
genome information source:
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Pvulgaris/assembly/
Xin Zhou
08:35 am Feature #34 (Closed): add soybean genome
genome information source:
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Gmax/assembly/
requested by a soybe...
Xin Zhou

08/20/2013

10:57 pm Feature #33 (New): batch GEO id output
* I was thinking a function like output all the GEO id of the tracks currently displayed
* It might be useful for us...
Daofeng Li

08/07/2013

09:32 am Bug #32 (Closed): right click twice caused background color change
closed due to not a real bug. Daofeng Li
09:21 am Bug #32: right click twice caused background color change
* I agree with you, it should be related to web browsers.
* anyway, I tested again at Mac, only reproduce it at Chro...
Daofeng Li
07:13 am Bug #32: right click twice caused background color change
I can't reproduce it, it should be a issue with web browser, not the genome browser Xin Zhou

08/06/2013

11:24 pm Bug #32 (Closed): right click twice caused background color change
* might be not a bug while it just happened on my computer
* I am using Google Chrome in Windows 7
* open browser, ...
Daofeng Li
07:25 pm Bug #31 (Resolved): Cannot refresh Tabix index file
failed to properly reconstruct path of cached tabix index file
suppose a track is http://domain.com/path/to/file.g...
Xin Zhou
07:22 pm Bug #31 (Closed): Cannot refresh Tabix index file
Cannot refresh Tabix index file Xin Zhou
02:59 pm washugb v23 release
We have applied version 23 of washugb code to our public servers today.
h2. Updates:
## custom categorical trac...
Daofeng Li
01:28 pm Browser Metadata Revision 71d28e6f: update with v23
Daofeng Li
01:28 pm Revision 71d28e6f: update with v23
Daofeng Li

08/05/2013

04:50 pm Feature #30 (New): bam track (full) view range limit
* in UCSC browser, when you zoom out like 1/4 chromosome range, the repeatmasker tracks will show 'zoom in to <= 10,0... Daofeng Li

08/04/2013

09:39 pm Bug #29 (Closed): make url didn't save secondary panel
solved Daofeng Li

08/03/2013

11:46 pm Bug #29 (Closed): make url didn't save secondary panel
* just open a secondary panel
* choose make url, click the url navigate to a new window, the secondary panel was not...
Daofeng Li
11:43 pm Feature #28 (New): add time information for session and status
* just think it might be useful to add time information to the session and status in saved session Daofeng Li
11:38 pm Bug #27 (Closed): retrieve session with custom categorical track error
Daofeng Li
11:37 pm Bug #24 (Closed): rule display problem when open secondary panel
Daofeng Li
11:37 pm Bug #24: rule display problem when open secondary panel
solved and closed. Daofeng Li
11:36 pm Bug #27: retrieve session with custom categorical track error
confirmed solved and closed. Daofeng Li
02:53 pm Bug #27: retrieve session with custom categorical track error
I am still getting same error on hg18.
Your session above works.
the session: XivUTiiNel was I just created.
I als...
Daofeng Li
01:40 pm Bug #27 (Resolved): retrieve session with custom categorical track error
code has been changed and your trial session has gone invalid
try this one on hg18: yT9pbEppjc
Xin Zhou
12:59 pm Bug #27 (Closed): retrieve session with custom categorical track error
* steps to reproduce:
## open hg18 default tracks
## add the example custom categorical track
## save session
#...
Daofeng Li

08/02/2013

10:17 am Bug #26 (Closed): categorical track submit json error
confirmed solved.
Also the hub works now.
Daofeng Li
08:56 am Bug #26 (Resolved): categorical track submit json error
Xin Zhou
08:53 am Bug #26 (Closed): categorical track submit json error
* use the example url for hg18 and hg19 respectively
## hg18: http://epgg-test.wustl.edu/cc.gz
## hg19: http://vi...
Daofeng Li
07:50 am Feature #14 (Resolved): Custom categorical track
Xin Zhou
07:49 am Feature #25: Quick capture of the central canvas
very nice attempt! Xin Zhou
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