Activity
From 07/25/2013 to 08/23/2013
08/23/2013
- 10:02 pm Feature #34: add soybean genome
- Thanks, fixed!
- 10:02 pm Feature #35: add common bean genome
- Thanks, fixed!
- 09:27 pm Feature #35: add common bean genome
- same problem as soybean genome, please remove trailing comma from "defaultScaffold"
- 09:07 pm Feature #34: add soybean genome
- thanks a lot!
Scaffold listing is not shown (click blue coordinate button, choose "zoom into a chrom"), please rem...
08/22/2013
- 12:30 pm Feature #35: add common bean genome
- added to test
- 12:27 pm Browser Metadata Revision 52e54a06: add soybean and commonbean, fix mm10 decor link
- 12:27 pm Revision 52e54a06: add soybean and commonbean, fix mm10 decor link
08/21/2013
- 06:17 pm Feature #34: add soybean genome
- * soybean added to test.
* Could you please review and let me know your suggestions? - 08:36 am Feature #35 (Closed): add common bean genome
- genome information source:
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Pvulgaris/assembly/ - 08:35 am Feature #34 (Closed): add soybean genome
- genome information source:
ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Gmax/assembly/
requested by a soybe...
08/20/2013
- 10:57 pm Feature #33 (New): batch GEO id output
- * I was thinking a function like output all the GEO id of the tracks currently displayed
* It might be useful for us...
08/07/2013
- 09:32 am Bug #32 (Closed): right click twice caused background color change
- closed due to not a real bug.
- 09:21 am Bug #32: right click twice caused background color change
- * I agree with you, it should be related to web browsers.
* anyway, I tested again at Mac, only reproduce it at Chro... - 07:13 am Bug #32: right click twice caused background color change
- I can't reproduce it, it should be a issue with web browser, not the genome browser
08/06/2013
- 11:24 pm Bug #32 (Closed): right click twice caused background color change
- * might be not a bug while it just happened on my computer
* I am using Google Chrome in Windows 7
* open browser, ... - 07:25 pm Bug #31 (Resolved): Cannot refresh Tabix index file
- failed to properly reconstruct path of cached tabix index file
suppose a track is http://domain.com/path/to/file.g... - 07:22 pm Bug #31 (Closed): Cannot refresh Tabix index file
- Cannot refresh Tabix index file
- 02:59 pm washugb v23 release
- We have applied version 23 of washugb code to our public servers today.
h2. Updates:
## custom categorical trac... - 01:28 pm Revision 71d28e6f: update with v23
- 01:28 pm Browser Metadata Revision 71d28e6f: update with v23
08/05/2013
- 04:50 pm Feature #30 (New): bam track (full) view range limit
- * in UCSC browser, when you zoom out like 1/4 chromosome range, the repeatmasker tracks will show 'zoom in to <= 10,0...
08/04/2013
- 09:39 pm Bug #29 (Closed): make url didn't save secondary panel
- solved
08/03/2013
- 11:46 pm Bug #29 (Closed): make url didn't save secondary panel
- * just open a secondary panel
* choose make url, click the url navigate to a new window, the secondary panel was not... - 11:43 pm Feature #28 (New): add time information for session and status
- * just think it might be useful to add time information to the session and status in saved session
- 11:38 pm Bug #27 (Closed): retrieve session with custom categorical track error
- 11:37 pm Bug #24 (Closed): rule display problem when open secondary panel
- 11:37 pm Bug #24: rule display problem when open secondary panel
- solved and closed.
- 11:36 pm Bug #27: retrieve session with custom categorical track error
- confirmed solved and closed.
- 02:53 pm Bug #27: retrieve session with custom categorical track error
- I am still getting same error on hg18.
Your session above works.
the session: XivUTiiNel was I just created.
I als... - 01:40 pm Bug #27 (Resolved): retrieve session with custom categorical track error
- code has been changed and your trial session has gone invalid
try this one on hg18: yT9pbEppjc - 12:59 pm Bug #27 (Closed): retrieve session with custom categorical track error
- * steps to reproduce:
## open hg18 default tracks
## add the example custom categorical track
## save session
#...
08/02/2013
- 10:17 am Bug #26 (Closed): categorical track submit json error
- confirmed solved.
Also the hub works now. - 08:56 am Bug #26 (Resolved): categorical track submit json error
- 08:53 am Bug #26 (Closed): categorical track submit json error
- * use the example url for hg18 and hg19 respectively
## hg18: http://epgg-test.wustl.edu/cc.gz
## hg19: http://vi... - 07:50 am Feature #14 (Resolved): Custom categorical track
- 07:49 am Feature #25: Quick capture of the central canvas
- very nice attempt!
08/01/2013
- 11:54 pm Feature #25 (New): Quick capture of the central canvas
- * I have tried developing a plugin for quick capture the central canvas as a PNG figure
* enable this plugin is easy...
07/30/2013
- 02:14 pm Feature #14: Custom categorical track
- Do you mind put this issue to a higher priority? Thanks.
07/29/2013
- 09:49 pm Bug #24 (Closed): rule display problem when open secondary panel
- * little display problem
* adjust the rule to screen wide
* open secondary panel, you will found the rule still acr... - 12:15 pm Bug #18 (Closed): embed example 2 from test not working
- 12:14 pm Feature #19 (Closed): new url parameter for public hub
- 12:14 pm Bug #12 (Closed): message after datahub submission confusion
- 12:13 pm Bug #20 (Closed): track information display problem
- 12:13 pm Bug #22 (Closed): no thing happens when click information after right click on refgene track
- 12:13 pm Bug #23 (Closed): metadata colormap not added for public hub by url parameter
07/28/2013
- 12:24 pm washugb v22 release
- We have applied v22 source code to our public servers.
h2. updates:
Please see our blog plots for details:
#... - 07:10 am Bug #23 (Resolved): metadata colormap not added for public hub by url parameter
- Use "metadata" parameter in URL to add terms to colormap.
07/27/2013
- 04:48 pm Bug #23 (Closed): metadata colormap not added for public hub by url parameter
- * if access the public hub by url parameter, will found the meta colormap was not added
- 03:52 pm Feature #19 (Resolved): new url parameter for public hub
- Thanks for the suggestion! See this example: http://epgg-test.wustl.edu/browser/?genome=hg18&publichub=mm1s
- 03:38 pm Bug #22 (Resolved): no thing happens when click information after right click on refgene track
- 03:38 pm Bug #20 (Resolved): track information display problem
- 03:37 pm Bug #12 (Resolved): message after datahub submission confusion
07/26/2013
- 10:25 pm Bug #22 (Closed): no thing happens when click information after right click on refgene track
- * just right click on refgene track, selection information, nothing happened
* see screenshot - 02:47 pm Feature #21 (New): operation history
- * Is it possible or useful to add the history of operations for the browser (back to some operation steps before etc)...
- 11:18 am Bug #20 (Closed): track information display problem
- * see the attached picture, the url displayed out of the box
- 11:02 am Bug #18: embed example 2 from test not working
- * confirmed solved.
* since the code will continue update, and this issue might happen again, we could left it as op... - 10:55 am Feature #19 (Closed): new url parameter for public hub
- * I am thinking a url parameter for public hub would be useful for loading hub by single click
* example like pubhub... - 10:52 am Bug #18 (Resolved): embed example 2 from test not working
- 10:47 am Feature #7 (Closed): store gene set info in datahub descriptor file
- 10:44 am Bug #18 (Closed): embed example 2 from test not working
- * visiting url: http://cgs.wustl.edu/~xzhou/plugin/2.html
* an error happens: Uncaught ReferenceError: trackstyle_co...
07/25/2013
- 09:42 pm Feature #17 (New): public datahub unload button?
- * I noticed that after I loaded a json datahub, the 'remove all' cannot be used to remove all added tracks (not a bug...
- 07:08 pm Browser Metadata Revision 5f46a05f: hg18 public hub added
- 07:08 pm Revision 5f46a05f: hg18 public hub added
- 07:07 pm Revision ed2c5f6e: public hub added
- 07:07 pm Browser Metadata Revision ed2c5f6e: public hub added
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