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| 1 |
knownGene UCSC genes \N 2 0 1 http://genome.ucsc.edu/cgi-bin/hgGene?db=mm9&hgg_type=knownGene&hgg_gene= |
|---|---|
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knownGenepromoter promoters (UCSC genes) knownGene 2 0 0 \N |
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knownGeneutr3 3' UTRs (UCSC genes) knownGene 2 0 0 \N |
| 4 |
knownGeneutr5 5' UTRs (UCSC genes) knownGene 2 0 0 \N |
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knownGeneexons exons (UCSC genes) knownGene 2 0 0 \N |
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knownGeneintrons introns (UCSC genes) knownGene 2 0 0 \N |
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refGene RefSeq genes \N 2 0 1 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=Nucleotide&doptcmdl=GenBank&term= |
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refGenepromoter promoters (RefSeq genes) refGene 2 0 0 \N |
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refGeneutr3 3' UTRs (RefSeq genes) refGene 2 0 0 \N |
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refGeneutr5 5' UTRs (RefSeq genes) refGene 2 0 0 \N |
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refGeneexons exons (RefSeq genes) refGene 2 0 0 \N |
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refGeneintrons introns (RefSeq genes) refGene 2 0 0 \N |
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ensGene Ensembl genes \N 2 0 1 http://www.ensembl.org/Mus_musculus/geneview?gene= |
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ensGenepromoter promoters (Ensembl genes) ensGene 2 0 0 \N |
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ensGeneutr3 3' UTRs (Ensembl genes) ensGene 2 0 0 \N |
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ensGeneutr5 5' UTRs (Ensembl genes) ensGene 2 0 0 \N |
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ensGeneexons exons (Ensembl genes) ensGene 2 0 0 \N |
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ensGeneintrons introns (Ensembl genes) ensGene 2 0 0 \N |
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rmsk_ensemble RepeatMasker Ensemble \N 4 12 0 \N |
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RNA RNA \N 4 0 0 \N |
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RNAsrpRNA srpRNA (RNA) RNA 4 0 0 \N |
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RNArRNA rRNA (RNA) RNA 4 0 0 \N |
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RNAsnRNA snRNA (RNA) RNA 4 0 0 \N |
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RNAtRNA tRNA (RNA) RNA 4 0 0 \N |
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RNAscRNA scRNA (RNA) RNA 4 0 0 \N |
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RNARNA RNA (RNA) RNA 4 0 0 \N |
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DNA DNA transposon \N 4 0 0 \N |
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DNATcMar TcMar (DNA transposon) DNA 4 0 0 \N |
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DNATcMar? TcMar? (DNA transposon) DNA 4 0 0 \N |
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DNADNA DNA (DNA transposon) DNA 4 0 0 \N |
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DNATc2 Tc2 (DNA transposon) DNA 4 0 0 \N |
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DNACharlie Charlie (DNA transposon) DNA 4 0 0 \N |
| 33 |
DNAMuDR MuDR (DNA transposon) DNA 4 0 0 \N |
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DNAMER2_type MER2_type (DNA transposon) DNA 4 0 0 \N |
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DNAPiggyBac PiggyBac (DNA transposon) DNA 4 0 0 \N |
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DNATip100 Tip100 (DNA transposon) DNA 4 0 0 \N |
| 37 |
DNAMariner Mariner (DNA transposon) DNA 4 0 0 \N |
| 38 |
DNAAcHobo AcHobo (DNA transposon) DNA 4 0 0 \N |
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DNAMER1_type MER1_type (DNA transposon) DNA 4 0 0 \N |
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DNAMER1_type? MER1_type? (DNA transposon) DNA 4 0 0 \N |
| 41 |
DNATigger Tigger (DNA transposon) DNA 4 0 0 \N |
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DNAhAT hAT (DNA transposon) DNA 4 0 0 \N |
| 43 |
DNAhAT? hAT? (DNA transposon) DNA 4 0 0 \N |
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SINE SINE \N 4 0 0 \N |
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SINEtRNA tRNA (SINE) SINE 4 0 0 \N |
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SINEMIR MIR (SINE) SINE 4 0 0 \N |
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SINESINE SINE (SINE) SINE 4 0 0 \N |
| 48 |
SINEB2 B2 (SINE) SINE 4 0 0 \N |
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SINEID ID (SINE) SINE 4 0 0 \N |
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SINEB4 B4 (SINE) SINE 4 0 0 \N |
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SINEAlu Alu (SINE) SINE 4 0 0 \N |
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LINE LINE \N 4 0 0 \N |
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LINERTE RTE (LINE) LINE 4 0 0 \N |
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LINEL2 L2 (LINE) LINE 4 0 0 \N |
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LINEL1 L1 (LINE) LINE 4 0 0 \N |
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LINECR1 CR1 (LINE) LINE 4 0 0 \N |
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LTR LTR \N 4 0 0 \N |
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LTRERV ERV (LTR) LTR 4 0 0 \N |
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LTRERVL ERVL (LTR) LTR 4 0 0 \N |
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LTRERVL? ERVL? (LTR) LTR 4 0 0 \N |
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LTRMaLR MaLR (LTR) LTR 4 0 0 \N |
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LTRLTR LTR (LTR) LTR 4 0 0 \N |
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LTRERVK ERVK (LTR) LTR 4 0 0 \N |
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LTRGypsy Gypsy (LTR) LTR 4 0 0 \N |
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LTRGypsy? Gypsy? (LTR) LTR 4 0 0 \N |
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LTRERV1 ERV1 (LTR) LTR 4 0 0 \N |
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LTRERV1? ERV1? (LTR) LTR 4 0 0 \N |
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LTRGenie? Genie? (LTR) LTR 4 0 0 \N |
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Low_complexity low complexity \N 4 0 0 \N |
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Satellite satellite \N 4 0 0 \N |
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SatelliteSatellite satellite (satellite) Satellite 4 0 0 \N |
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Satellitecentr centr (satellite) Satellite 4 0 0 \N |
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Simple_repeat simple repeat \N 4 0 0 \N |
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Other other repeats \N 4 0 0 \N |
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Unknown unknown \N 4 0 0 \N |
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UnknownUnknown Unknown (unknown) Unknown 4 0 0 \N |
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UnknownY-chromosome Y-chromosome (unknown) Unknown 4 0 0 \N |
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vertebratephastCons30way vertebrate PhastCons \N 6 8 0 \N |
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euarchontogliresphastCons30way euarchontoglires PhastCons \N 6 8 0 \N |
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placentalphastCons30way placental PhastCons \N 6 8 0 \N |
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vertebratephyloP30way vertebrate PhyloP \N 6 8 0 \N |
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euarchontogliresphyloP30way euarchontoglires PhyloP \N 6 8 0 \N |
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placentalphyloP30way placental PhyloP \N 6 8 0 \N |
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cpgisland CpG island \N 5 0 0 \N |
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gc5Base GC percent \N 5 14 0 \N |
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wgEncodeCrgMapabilityAlign100mer 100mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |
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wgEncodeCrgMapabilityAlign36mer 36mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |
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wgEncodeCrgMapabilityAlign40mer 40mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |
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wgEncodeCrgMapabilityAlign50mer 50mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |
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wgEncodeCrgMapabilityAlign75mer 75mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |