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root / Am1.0 / buildscaffold.py @ ed2c5f6e

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print 'ROOT\tchromosome\t0\nROOT\tcontig\t0'
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fout=open('longstr','w')
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with open('chromlen') as fin:
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        for line in fin:
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                lst=line.rstrip().split('\t')
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                if lst[0].startswith('Scaffold') or lst[0].startswith('scaffold'):
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                        print 'chromosome\t{0}\t{1}'.format(lst[0],lst[1])
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                        fout.write(lst[0]+',')
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                else:
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                        print 'contig\t{0}\t{1}'.format(lst[0],lst[1])
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fout.write('\n')
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fout.close()
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# sort -k2nr