Revision ed2c5f6e
| b/hg18/makeDb.sql | ||
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| 180 | 180 |
); |
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load data local infile "dataset" into table dataset; |
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drop table if exists mock; |
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create table mock ( |
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tkname varchar(255) not null |
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); |
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load data local infile "mock" into table mock; |
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|
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drop table if exists encode; |
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create table encode( |
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tkname varchar(255) not null |
| ... | ... | |
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load data local infile "scaffoldInfo" into table scaffoldInfo; |
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drop table if exists publichub; |
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create table publichub ( |
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name varchar(255) not null, |
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logo text null, |
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url text not null, |
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institution text not null, |
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description text not null |
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); |
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load data local infile 'publichub' into table publichub; |
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| b/hg19/metadataVocabulary | ||
|---|---|---|
| 140 | 140 |
21002 DNA Methylation |
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21003 DNA Methylation |
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21004 DNA Methylation |
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21005 DNA Methylation |
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22000 Histone Mark |
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22001 Histone Mark |
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H2A Histone Mark |
| ... | ... | |
| 1148 | 1149 |
30022 Institution |
| 1149 | 1150 |
30023 Institution |
| 1150 | 1151 |
30024 Institution |
| 1152 |
30025 Institution |
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70001 Donor Ethnicity |
| 1152 | 1154 |
70002 Donor Ethnicity |
| 1153 | 1155 |
70004 Donor Ethnicity |
| b/hg19/publichub | ||
|---|---|---|
| 1 |
Multiple Myeloma profiling http://bradner.dfci.harvard.edu/images/generegulationchemistry.jpg http://vizhub.wustl.edu/hubSample/hg19/hub2.json James E. Bradner's lab at Harvard Medical School A brief description here... |
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| 1 |
methylCRF prediction of Roadmap methylomes http://cgs.wustl.edu/~dli/labwebsite_dev/img/wang_logo.png http://vizhub.wustl.edu/dli/methylcrf.hub <a href=http://wang.wustl.edu/ target=_blank>Wang Lab at Washington University in St. Louis</a> Using <a href=http://methylcrf.wustl.edu/ target=_blank>methylCRF</a> to predict single CpG methylation profiles by combining MeDIP-seq and MRE-seq data from Roadmap Project. |
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| b/hg19/trackAttr2idx | ||
|---|---|---|
| 569 | 569 |
21002 RRBS 21002 reduced representation bisulfite sequencing |
| 570 | 570 |
21003 MeDIP-Seq 21003 methylated DNA immunoprecipitation |
| 571 | 571 |
21004 Bisulfite-Seq 21004 bisulfite-based methods MethylC-seq |
| 572 |
21005 methylCRF 21005 predicted CpG methylation by combining MeDIP-seq and MRE-seq |
|
| 572 | 573 |
22000 ChIP-Seq control 22001 ChIP-Seq control |
| 573 | 574 |
22001 ChIP-Seq input 22001 ChIP-Seq input |
| 574 | 575 |
22002 H2AK5ac 22002 acetylation of lysine 5 of histone H2A |
| ... | ... | |
| 653 | 654 |
30022 UNC 30022 The University of North Carolina at Chapel Hill |
| 654 | 655 |
30023 MIT 30023 Massachusetts Institute of Technology |
| 655 | 656 |
30024 UMass institute University of Massachusetts Amherst |
| 657 |
30025 WUSTL institute Washington University in St. Louis |
|
| 656 | 658 |
50001 1 50001 mock 1 |
| 657 | 659 |
50002 2 50002 mock 2 |
| 658 | 660 |
50003 3 50003 mock 3 |
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