Statistics
| Branch: | Revision:

root / mm9 / track2Detail_longrange @ ed2c5f6e

History | View | Annotate | Download (10.1 kB)

1 8c368a17 Daofeng Li
Esc_20kb_hindIII_rep1	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication=biological replicate 1; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
2 8c368a17 Daofeng Li
Esc_20kb_hindIII_rep2	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication=biological replicate 2; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
3 8c368a17 Daofeng Li
Esc_20kb_NcoI	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=NcoI; Replication=N/A; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
4 8c368a17 Daofeng Li
Esc_40kb_hindIII_rep1	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication= biological replicate 1; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
5 8c368a17 Daofeng Li
Esc_40kb_hindIII_rep2	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication=biological replicate 2; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
6 8c368a17 Daofeng Li
Esc_40kb_hindIII_combined	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication=replicates 1 and 2 combined; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
7 8c368a17 Daofeng Li
Esc_40kb_NcoI	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=NcoI; Replication=N/A; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
8 8c368a17 Daofeng Li
Cortex_20kb_hindIII_rep1	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=biological replicate 1; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
9 8c368a17 Daofeng Li
Cortex_20kb_hindIII_rep2	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=biological replicate 2; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
10 8c368a17 Daofeng Li
Cortex_40kb_hindIII_rep1	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=biological replicate 1; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
11 8c368a17 Daofeng Li
Cortex_40kb_hindIII_rep2	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=biological replicate 2; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
12 8c368a17 Daofeng Li
Cortex_40kb_hindIII_combined	Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=replicates 1 and 2 combined; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html
13 8c368a17 Daofeng Li
GSE28247_st3ab	Publication=CTCF-Mediated Functional Chromatin Interactome in Pluripotent Cells; Journal=Nat Genet 19;43(7):630-8; Year=2011; Institution=Genome Institute of Singapore; PI=Chia-Lin Wei; Sample=Mouse E14 embryonic stem cell; Source=Supplementary table 3a and 3b; Note=Intra- and inter-chromosomal interaction clusters
14 8c368a17 Daofeng Li
GSE28247_st3c	Publication=CTCF-Mediated Functional Chromatin Interactome in Pluripotent Cells; Journal=Nat Genet 19;43(7):630-8; Year=2011; Institution=Genome Institute of Singapore; PI=Chia-Lin Wei; Sample=Mouse E14 embryonic stem cell; Source=Supplementary table 3c; Note=CTCF-associated interactions
15 8c368a17 Daofeng Li
GSM870040	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr2:180173673 (mm9); Biological replicate=1; Original file=GSM870040_ATM-67-R1.validPair.txt.gz
16 8c368a17 Daofeng Li
GSM870041	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr2:180173673 (mm9); Biological replicate=2; Original file=GSM870041_ATM-67-R2.validPair.txt.gz
17 8c368a17 Daofeng Li
GSM870042	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr7:31203181 (mm9); Biological replicate=1; Original file=GSM870042_ATM-5353-R1.validPair.txt.gz
18 8c368a17 Daofeng Li
GSM870043	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr18:70688564 (mm9); Biological replicate=1; Original file=GSM870043_ATM-5714-R1.validPair.txt.gz
19 8c368a17 Daofeng Li
GSM870044	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr18:70688564 (mm9); Biological replicate=1; Original file=GSM870044_ATM-5714-R2.validPair.txt.gz
20 8c368a17 Daofeng Li
GSM870045	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; i-scei integration location=chr15:5565929 (mm9); Biological replicate=1; Original file=GSM870045_WT-416I818-R1.validPair.txt.gz
21 8c368a17 Daofeng Li
GSM870046	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; i-scei integration location=chr2:148388069 (mm9); Biological replicate=1; Original file=GSM870046_WT-416I825-R1.validPair.txt.gz
22 8c368a17 Daofeng Li
GSE35519_ATM_10m	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; Bin size=10MB; Original file=GSE35519_AMuLV-ATM-pooled-10M-allxall-ICed.txt.gz
23 8c368a17 Daofeng Li
GSE35519_ATM_1m	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; Bin size=1MB; Original file=GSE35519_AMuLV-ATM-pooled-1M-allxall-ICed.txt.gz
24 8c368a17 Daofeng Li
GSE35519_ATM_100k	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; Bin size=100KB; Original file=GSE35519_AMuLV-ATM-pooled-100k-allxall-ICed.txt.gz
25 8c368a17 Daofeng Li
GSE35519_WT_1m	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; Bin size=1MB; Original file=GSE35519_AMuLV-WT-pooled-1M-allxall-ICed.txt.gz
26 8c368a17 Daofeng Li
GSE35519_WT_10m	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; Bin size=10MB; Original file=GSE35519_AMuLV-WT-pooled-10M-allxall-ICed.txt.gz; Note=chr20 in original file was replaced with chrX
27 8c368a17 Daofeng Li
GSE35519_WT_100k	Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; Bin size=100KB; Original file=GSE35519_AMuLV-WT-pooled-100K-allxall-ICed.txt.gz; Note=chr20 in original file was replaced with chrX