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| 1 | 8c368a17 | Daofeng Li | GSM500898_4hr_K4_rep1_MA2Cscore developmental stage=4hpf (dome/30%); fraction=ChIP (test); antibody=anti-H3K4me3; developmental stage=4hpf (dome/30%); fraction=ChIP (control); antibody=anti-H3 |
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| 2 | 8c368a17 | Daofeng Li | GSM500899_4hr_K27_rep1_MA2Cscore developmental stage=4hpf (dome/30%); fraction=ChIP (test); antibody=anti-H3K27me3; developmental stage=4hpf (dome/30%); fraction=ChIP (control); antibody=anti-H3 |
| 3 | 8c368a17 | Daofeng Li | GSM500900_4hr_K36_rep1_MA2Cscore developmental stage=4hpf (dome/30%); fraction=ChIP (test); antibody=anti-H3K36me3; developmental stage=4hpf (dome/30%); fraction=ChIP (control); antibody=anti-H3 |
| 4 | 8c368a17 | Daofeng Li | GSM500901_4hr_polII_rep1_MA2Cscore developmental stage=4hpf (dome/30%); fraction=ChIP (test); antibody=anti-PolII; developmental stage=4hpf (dome/30%); fraction=Input; antibody=none |
| 5 | 8c368a17 | Daofeng Li | GSM500902_4hr_K4_rep2_MA2Cscore developmental stage=4hpf (dome/30%); fraction=ChIP (test); antibody=anti-H3K4me3; developmental stage=4hpf (dome/30%); fraction=ChIP (control); antibody=anti-H3 |
| 6 | 8c368a17 | Daofeng Li | GSM500903_4hr_K36_rep2_MA2Cscore developmental stage=4hpf (dome/30%); fraction=ChIP (test); antibody=anti-H3K27me3; developmental stage=4hpf (dome/30%); fraction=ChIP (control); antibody=anti-H3 |
| 7 | 8c368a17 | Daofeng Li | GSM500904_4hr_K27_rep2_MA2Cscore developmental stage=4hpf (dome/30%); fraction=ChIP (test); antibody=anti-H3K36me3; developmental stage=4hpf (dome/30%); fraction=ChIP (control); antibody=anti-H3 |
| 8 | 8c368a17 | Daofeng Li | GSM500905_4hr_polII_rep2_MA2Cscore developmental stage=4hpf (dome/30%); fraction=ChIP (test); antibody=anti-PolII; developmental stage=4hpf (dome/30%); fraction=Input; antibody=none |
| 9 | 8c368a17 | Daofeng Li | GSM500906_256_K4_MA2Cscore developmental stage=256 cell; fraction=ChIP (test); antibody=anti-H3K4me3; developmental stage=256 cell; fraction=ChIP (control); antibody=anti-H3 |
| 10 | 8c368a17 | Daofeng Li | GSM500907_256_K27_MA2Cscore developmental stage=256 cell; fraction=ChIP (test); antibody=anti-H3K27me3; developmental stage=256 cell; fraction=ChIP (control); antibody=anti-H3 |
| 11 | 8c368a17 | Daofeng Li | GSM500908_256_K36_MA2Cscore developmental stage=256 cell; fraction=ChIP (test); antibody=anti-H3K36me3; developmental stage=256 cell; fraction=ChIP (control); antibody=anti-H3 |
| 12 | 8c368a17 | Daofeng Li | GSM500909_256_polII_MA2Cscore developmental stage=256 cell; fraction=ChIP (test); antibody=anti-PolII; developmental stage=256 cell; fraction=Input; antibody=none |
| 13 | 8c368a17 | Daofeng Li | GSE26609_H3K4me3_sp_ChIP GSE=GSE26609; PMID=21383318 |
| 14 | 8c368a17 | Daofeng Li | GSM564427_neg_RZN001_score22_zv9_density background=AB, wild type; developmental stage=unfertilized eggs |
| 15 | 8c368a17 | Daofeng Li | GSM564428_neg_RZN002_score22_zv9_density background=AB, wild type; developmental stage=just fertilized one cell embryos |
| 16 | 8c368a17 | Daofeng Li | GSM564429_neg_RZN003_score22_zv9_density background=AB, wild type; developmental stage=mixure of 16/32 cell embryos |
| 17 | 8c368a17 | Daofeng Li | GSM564430_neg_RZN004_score22_zv9_density background=AB, wild type; developmental stage=mixure of 128/256 cell embryos |
| 18 | 8c368a17 | Daofeng Li | GSM564431_neg_RZN005_score22_zv9_density background=AB, wild type; developmental stage=MBT stage embryo (3.5hpf) |
| 19 | 8c368a17 | Daofeng Li | GSM564432_neg_RZN006_score22_zv9_density background=AB, wild type; developmental stage=post-MBT stage embryo (5.3hpf) |
| 20 | 8c368a17 | Daofeng Li | RNA_2-4cell tissue=embryo; developmental stage=embryogenesis: 2-4 cell stage; average insert size (fragment length)=710.502832; stdev for insert size=1336.039246 |
| 21 | 8c368a17 | Daofeng Li | RNA_1Kcell tissue=embryo; developmental stage=embryogenesis: 1K cell stage; average insert size (fragment length)=725.22487; stdev for insert size=1421.948 |
| 22 | 8c368a17 | Daofeng Li | RNA_dome tissue=embryo; developmental stage=embryogenesis: dome stage; average insert size (fragment length)=663.190661; stdev for insert size=1281.290866 |
| 23 | 8c368a17 | Daofeng Li | RNA_shield tissue=embryo; developmental stage=embryogenesis: shield stage; average insert size (fragment length)=297.987328; stdev for insert size=154.825595 |
| 24 | 8c368a17 | Daofeng Li | RNA_bud tissue=embryo; developmental stage=embryogenesis: bud stage; average insert size (fragment length)=606.819125; stdev for insert size=1119.538881 |
| 25 | 8c368a17 | Daofeng Li | RNA_28hpf tissue=embryo; developmental stage=embryogenesis: 28 hpf stage; average insert size (fragment length)=627.757794; stdev for insert size=1180.386961 |
| 26 | 8c368a17 | Daofeng Li | RNA_2dpf tissue=embryo; developmental stage=embryogenesis: 2 dpf stage; average insert size (fragment length)=610.692695; stdev for insert size=1125.321887 |
| 27 | 8c368a17 | Daofeng Li | RNA_5dpf tissue=embryo; developmental stage=embryogenesis: 5 dpf stage; average insert size (fragment length)=1287.552595; stdev for insert size=1824.757762 |
| 28 | 8c368a17 | Daofeng Li | H3K4me3_shield developmental stage=embryo; embryogenesis stage=shield; chip antibody=Anti-trimethyl-Histone H3 (Lys4); chip antibody vendor=Millipore; chip antibody catalog number=#07-473 |
| 29 | 8c368a17 | Daofeng Li | H3K27me3_shield developmental stage=embryo; embryogenesis stage=shield; chip antibody=Anti-trimethyl-Histone H3 (Lys27); chip antibody vendor=Millipore; chip antibody catalog number=#07-449 |
| 30 | 8c368a17 | Daofeng Li | ChIP_WCE_shield developmental stage=embryo; embryogenesis stage=shield |
| 31 | 8c368a17 | Daofeng Li | GSM675174_MBT_H3K27me3_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=H3K27me3; vendor=Millipore 07-449; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 32 | 8c368a17 | Daofeng Li | GSM675175_MBT_H3K27me3_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=H3K27me3; vendor=Millipore 07-449; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 33 | 8c368a17 | Daofeng Li | GSM675176_MBT_H3K36me3_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=H3K36me3; vendor=Diagenode pAb-058-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 34 | 8c368a17 | Daofeng Li | GSM675177_MBT_H3K36me3_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=H3K36me3; vendor=Diagenode pAb-058-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 35 | 8c368a17 | Daofeng Li | GSM675178_MBT_H3K4me3_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=H3K4me3; vendor=Diagenode pAb-003-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 36 | 8c368a17 | Daofeng Li | GSM675179_MBT_H3K4me3_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=H3K4me3; vendor=Diagenode pAb-003-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 37 | 8c368a17 | Daofeng Li | GSM675180_MBT_H3K9me3_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=H3K9me3; vendor=Diagenode pAb-056-50; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 38 | 8c368a17 | Daofeng Li | GSM675181_MBT_H3K9me3_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=H3K9me3; vendor=Diagenode pAb-056-50; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 39 | 8c368a17 | Daofeng Li | GSM675182_MBT_polii_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=RNA Pol II; vendor=Santa Cruz sc-899; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 40 | 8c368a17 | Daofeng Li | GSM675183_MBT_polii_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; chip antibody=RNA Pol II; vendor=Santa Cruz sc-899; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none |
| 41 | 8c368a17 | Daofeng Li | GSM675184_postMBT_H3K27me3_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=H3K27me3; vendor=Millipore 07-449; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 42 | 8c368a17 | Daofeng Li | GSM675185_postMBT_H3K27me3_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=H3K27me3; vendor=Millipore 07-449; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 43 | 8c368a17 | Daofeng Li | GSM675186_postMBT_H3K36me3_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=H3K36me3; vendor=Diagenode pAb-058-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 44 | 8c368a17 | Daofeng Li | GSM675187_postMBT_H3K36me3_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=H3K36me3; vendor=Diagenode pAb-058-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 45 | 8c368a17 | Daofeng Li | GSM675188_postMBT_H3K4me3_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=H3K4me3; vendor=Diagenode pAb-003-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 46 | 8c368a17 | Daofeng Li | GSM675189_postMBT_H3K4me3_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=H3K4me3; vendor=Diagenode pAb-003-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 47 | 8c368a17 | Daofeng Li | GSM675190_postMBT_H3K9me3_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=H3K9me3; vendor=Diagenode pAb-056-50; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 48 | 8c368a17 | Daofeng Li | GSM675191_postMBT_H3K9me3_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=H3K9me3; vendor=Diagenode pAb-056-50; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 49 | 8c368a17 | Daofeng Li | GSM675192_postMBT_polii_1 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=RNA Pol II; vendor=Santa Cruz sc-899; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 50 | 8c368a17 | Daofeng Li | GSM675193_postMBT_polii_2 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; chip antibody=RNA Pol II; vendor=Santa Cruz sc-899; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none |
| 51 | 8c368a17 | Daofeng Li | GSM675194_preMBT_H3K27me3 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; chip antibody=H3K27me3; vendor=Millipore 07-449; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; antibody=none |
| 52 | 8c368a17 | Daofeng Li | GSM675195_preMBT_H3K36me3 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; chip antibody=H3K36me3; vendor=Diagenode pAb-058-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; antibody=none |
| 53 | 8c368a17 | Daofeng Li | GSM675196_preMBT_H3K4me3 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; chip antibody=H3K4me3; vendor=Diagenode pAb-003-050; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; antibody=none |
| 54 | 8c368a17 | Daofeng Li | GSM675197_preMBT_H3K9me3 cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; chip antibody=H3K9me3; vendor=Diagenode pAb-056-50; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; antibody=none |
| 55 | 8c368a17 | Daofeng Li | GSM675198_preMBT_polii cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; chip antibody=RNA Pol II; vendor=Santa Cruz sc-899; cell type=Embryonic cells; source=AB strain zebrafish embryos; developmental stage=preMBT, 2.5 hpf, 256-cell stage; antibody=none |
| 56 | 8c368a17 | Daofeng Li | GSM813749_H3K4me3_IP_24hpf tissue=whole embryo; developmental stage=24 hours post fertilization; genotype=wt; antibody=anti-H3K4me3; antibody manufacturer=Abcam; antibody catalog #=ab8580 |
| 57 | 8c368a17 | Daofeng Li | GSM813750_H3K4me3_IP_72hpf tissue=whole embryo; developmental stage=72 hours post fertilization; genotype=wt; antibody=anti-H3K4me3; antibody manufacturer=Abcam; antibody catalog #=ab8580 |
| 58 | 8c368a17 | Daofeng Li | GSM813751_H3K4me3_IP_Adult tissue=whole adult; developmental stage=mixed gender adults; genotype=wt; antibody=anti-H3K4me3; antibody manufacturer=Abcam; antibody catalog #=ab8580 |
| 59 | 8c368a17 | Daofeng Li | GSM813752_H3K36me3_IP_24hpf tissue=whole embryo; developmental stage=24 hours post fertilization; genotype=wt; antibody=anti-H3K36me3; antibody manufacturer=Abcam; antibody catalog #=ab9050 |
| 60 | 8c368a17 | Daofeng Li | GSM813753_H3K36me3_IP_72hpf tissue=whole embryo; developmental stage=72 hours post fertilization; genotype=wt; antibody=anti-H3K36me3; antibody manufacturer=Abcam; antibody catalog #=ab9050 |
| 61 | 8c368a17 | Daofeng Li | GSM813754_H3K36me3_IP_Adult tissue=whole adult; developmental stage=mixed gender adults; genotype=wt; antibody=anti-H3K36me3; antibody manufacturer=Abcam; antibody catalog #=ab9050 |
| 62 | 8c368a17 | Daofeng Li | GSM853234_Nanog_3.5hpf tissue=embryos; developmental stage=3.5hpf; strain=TU; chip antibody=Myc; binding site=Nanog-like |
| 63 | 8c368a17 | Daofeng Li | GSM853235_Nanog_4.5hpf tissue=embryos; developmental stage=4.5hpf; strain=TU; chip antibody=Myc; binding site=Nanog-like |
| 64 | 8c368a17 | Daofeng Li | GSM853236_Mxtx_4.5hpf tissue=embryos; developmental stage=4.5hpf; strain=TU; chip antibody=Myc; binding site=Mxtx2 |
| 65 | 8c368a17 | Daofeng Li | H3K4me3_dome.norm tissue=whole embryo; developmental stage=dome; antibody=H3K4me3; antibody vendor=Diagenode; antibody catalog=pAb-003-050; antibody batch=A3152-001P |
| 66 | 8c368a17 | Daofeng Li | H3K4me3_80epi.norm tissue=whole embryo; developmental stage=80% epiboly; antibody=H3K4me3; antibody vendor=Diagenode; antibody catalog=pAb-003-050; antibody batch=A3152-001P |
| 67 | 8c368a17 | Daofeng Li | H3K4me3_24hpf.norm tissue=whole embryo; developmental stage=24hpf; antibody=H3K4me3; antibody vendor=Diagenode; antibody catalog=pAb-003-050; antibody batch=A3152-001P |
| 68 | 8c368a17 | Daofeng Li | H3K4me3_48hpf.norm tissue=whole embryo; developmental stage=48hpf; antibody=H3K4me3; antibody vendor=Diagenode; antibody catalog=pAb-003-050; antibody batch=A3152-001P |
| 69 | 8c368a17 | Daofeng Li | H3K4me1_dome.norm tissue=whole embryo; developmental stage=dome; antibody=H3K4me1; antibody vendor=Diagenode; antibody catalog=CS-037-100; antibody batch=A399-001 |
| 70 | 8c368a17 | Daofeng Li | H3K4me1_80epi.norm tissue=whole embryo; developmental stage=80% epiboly; antibody=H3K4me1; antibody vendor=Diagenode; antibody catalog=CS-037-100; antibody batch=A399-001 |
| 71 | 8c368a17 | Daofeng Li | H3K4me1_24hpf.norm tissue=whole embryo; developmental stage=24hpf; antibody=H3K4me1; antibody vendor=Diagenode; antibody catalog=CS-037-100; antibody batch=A399-001 |
| 72 | 8c368a17 | Daofeng Li | H3K4me1_48hpf.norm tissue=whole embryo; developmental stage=48hpf; antibody=H3K4me1; antibody vendor=Diagenode; antibody catalog=CS-037-100; antibody batch=A399-001 |
| 73 | 8c368a17 | Daofeng Li | H3K27ac_dome.norm tissue=whole embryo; developmental stage=dome; antibody=H3K27ac; antibody=Abcam; antibody catalog=ab4729; antibody batch=GR6802 |
| 74 | 8c368a17 | Daofeng Li | H3K27ac_80epi.norm tissue=whole embryo; developmental stage=80% epiboly; antibody=H3K27ac; antibody=Abcam; antibody catalog=ab4729; antibody batch=GR6802 |
| 75 | 8c368a17 | Daofeng Li | H3K27ac_24hpf.norm tissue=whole embryo; developmental stage=24hpf; antibody=H3K27ac; antibody=Abcam; antibody catalog=ab4729; antibody batch=GR6802 |
| 76 | 8c368a17 | Daofeng Li | H3K27ac_48hpf.norm tissue=whole embryo; developmental stage=48hpf; antibody=H3K27ac; antibody=Abcam; antibody catalog=ab4729; antibody batch=GR6802 |
| 77 | 8c368a17 | Daofeng Li | GSM822655_preMBT_MeDIP_1 cell type=Embryonic cells; strain=AB; developmental stage=preMBT, 2.5 hpf, 256-cell stage; antibody=Anti-5-methylcytosine antibody (10 ng/µl); antibody catalog#=Mab-006-100; antibody vendor=Diagenode; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen.; cell type=Embryonic cells; strain=AB; developmental stage=preMBT, 2.5 hpf, 256-cell stage; antibody=none, input; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen. |
| 78 | 8c368a17 | Daofeng Li | GSM822656_preMBT_MeDIP_2 cell type=Embryonic cells; strain=AB; developmental stage=preMBT, 2.5 hpf, 256-cell stage; antibody=Anti-5-methylcytosine antibody (10 ng/µl); antibody catalog#=Mab-006-100; antibody vendor=Diagenode; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen.; cell type=Embryonic cells; strain=AB; developmental stage=preMBT, 2.5 hpf, 256-cell stage; antibody=none, input; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen. |
| 79 | 8c368a17 | Daofeng Li | GSM822657_MBT_MeDIP_1 cell type=Embryonic cells; strain=AB; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=Anti-5-methylcytosine antibody (10 ng/µl); antibody catalog#=Mab-006-100; antibody vendor=Diagenode; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen.; cell type=Embryonic cells; strain=AB; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none, input; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen. |
| 80 | 8c368a17 | Daofeng Li | GSM822658_MBT_MeDIP_2 cell type=Embryonic cells; strain=AB; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=Anti-5-methylcytosine antibody (10 ng/µl); antibody catalog#=Mab-006-100; antibody vendor=Diagenode; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen.; cell type=Embryonic cells; strain=AB; developmental stage=MBT, 3.5 hpf, 1000+-cell stage; antibody=none, input; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen. |
| 81 | 8c368a17 | Daofeng Li | GSM822659_postMBT_MeDIP_1 cell type=Embryonic cells; strain=AB; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=Anti-5-methylcytosine antibody (10 ng/µl); antibody catalog#=Mab-006-100; antibody vendor=Diagenode; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen.; cell type=Embryonic cells; strain=AB; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none, input; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen. |
| 82 | 8c368a17 | Daofeng Li | GSM822660_postMBT_MeDIP_2 cell type=Embryonic cells; strain=AB; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=Anti-5-methylcytosine antibody (10 ng/µl); antibody catalog#=Mab-006-100; antibody vendor=Diagenode; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen.; cell type=Embryonic cells; strain=AB; developmental stage=postMBT, 5.3 hpf, 50% epiboly; antibody=none, input; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen. |
| 83 | 8c368a17 | Daofeng Li | GSM822661_ZF4_MeDIP_1 cell line=ZF4; biomaterial provider=American Type Culture Collection; developmental stage=Embryo; antibody=Anti-5-methylcytosine antibody (10 ng/µl); antibody catalog#=Mab-006-100; antibody vendor=Diagenode; sample preparation protocol=Cells were harvesdted by trypsination and flash frozen in liq. N2 as dry pellets; cell line=ZF4; biomaterial provider=American Type Culture Collection; developmental stage=Embryo; antibody=none, input; sample preparation protocol=Cells were harvesdted by trypsination and flash frozen in liq. N2 as dry pellets |
| 84 | 8c368a17 | Daofeng Li | GSM822662_ZF4_MeDIP_2 cell line=ZF4; biomaterial provider=American Type Culture Collection; developmental stage=Embryo; antibody=Anti-5-methylcytosine antibody (10 ng/µl); antibody catalog#=Mab-006-100; antibody vendor=Diagenode; sample preparation protocol=Cells were harvesdted by trypsination and flash frozen in liq. N2 as dry pellets; cell line=ZF4; biomaterial provider=American Type Culture Collection; developmental stage=Embryo; antibody=none, input; sample preparation protocol=Cells were harvesdted by trypsination and flash frozen in liq. N2 as dry pellets |
| 85 | 8c368a17 | Daofeng Li | GSM913999_sperm_MeDIP_1 cell type=Sperm; strain=AB; developmental stage=Sperm [from adult males]; medip antibody=Anti-5-methylcytosine antibody (10 ng/µl); medip antibody catalog#=Mab-006-100; medip antibody vendor=Diagenode; sample preparation protocol=Zebrafish males were starved for 24 hrs and anesthetized in fish water with 0.016% tricaine (Sigma, Cat. No A-5040) immediately before sperm collection. Sperm was obtained with a capillary tube under gentle suction and flash frozen in liq. N2. Prior to DNA isolation, sperm was washed three times in T10N150E10 buffer (10 mM Tris-HCl pH 7.8, 150 mM NaCl,10 mM EDTA pH 8.0); cell type=Sperm; strain=AB; developmental stage=Sperm [from adult males]; antibody=none, input; sample preparation protocol=Zebrafish males were starved for 24 hrs and anesthetized in fish water with 0.016% tricaine (Sigma, Cat. No A-5040) immediately before sperm collection. Sperm was obtained with a capillary tube under gentle suction and flash frozen in liq. N2. Prior to DNA isolation, sperm was washed three times in T10N150E10 buffer (10 mM Tris-HCl pH 7.8, 150 mM NaCl,10 mM EDTA pH 8.0) |
| 86 | 8c368a17 | Daofeng Li | GSM914000_sperm_MeDIP_2 cell type=Sperm; strain=AB; developmental stage=Sperm [from adult males]; medip antibody=Anti-5-methylcytosine antibody (10 ng/µl); medip antibody catalog#=Mab-006-100; medip antibody vendor=Diagenode; sample preparation protocol=Zebrafish males were starved for 24 hrs and anesthetized in fish water with 0.016% tricaine (Sigma, Cat. No A-5040) immediately before sperm collection. Sperm was obtained with a capillary tube under gentle suction and flash frozen in liq. N2. Prior to DNA isolation, sperm was washed three times in T10N150E10 buffer (10 mM Tris-HCl pH 7.8, 150 mM NaCl,10 mM EDTA pH 8.0); cell type=Sperm; strain=AB; developmental stage=Sperm [from adult males]; antibody=none, input; sample preparation protocol=Zebrafish males were starved for 24 hrs and anesthetized in fish water with 0.016% tricaine (Sigma, Cat. No A-5040) immediately before sperm collection. Sperm was obtained with a capillary tube under gentle suction and flash frozen in liq. N2. Prior to DNA isolation, sperm was washed three times in T10N150E10 buffer (10 mM Tris-HCl pH 7.8, 150 mM NaCl,10 mM EDTA pH 8.0) |
| 87 | 8c368a17 | Daofeng Li | GSM914001_emb24h_MeDIP_1 cell type=Embryonic cells; strain=AB; developmental stage=24 hpf embryo, pharyngula stage; medip antibody=Anti-5-methylcytosine antibody (10 ng/µl); medip antibody catalog#=Mab-006-100; medip antibody vendor=Diagenode; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen.; cell type=Embryonic cells; strain=AB; developmental stage=24 hpf embryo, pharyngula stage; antibody=none, input; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen. |
| 88 | 8c368a17 | Daofeng Li | GSM914002_emb24h_MeDIP_2 cell type=Embryonic cells; strain=AB; developmental stage=24 hpf embryo, pharyngula stage; medip antibody=Anti-5-methylcytosine antibody (10 ng/µl); medip antibody catalog#=Mab-006-100; medip antibody vendor=Diagenode; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen.; cell type=Embryonic cells; strain=AB; developmental stage=24 hpf embryo, pharyngula stage; antibody=none, input; sample preparation protocol=Chorions were removed with 1 mg/ml pronase and embryos washed in egg water. Yolk proteins were removed in a de-yolking buffer, embryos were sedimented and flash-frozen. |
| 89 | 8c368a17 | Daofeng Li | BisSeq01_sperm.bedGraph SRX=SRX257162 |
| 90 | 8c368a17 | Daofeng Li | BisSeq02_egg.bedGraph SRX=SRX257163 |
| 91 | 8c368a17 | Daofeng Li | BisSeq03_2-16cell.bedGraph SRX=SRX257164 |
| 92 | 8c368a17 | Daofeng Li | BisSeq04_64cell.bedGraph SRX=SRX257166 |
| 93 | 8c368a17 | Daofeng Li | BisSeq05_256cell.bedGraph SRX=SRX257168 |
| 94 | 8c368a17 | Daofeng Li | BisSeq06_sphere.bedGraph SRX=SRX257169 |
| 95 | 8c368a17 | Daofeng Li | BisSeq07_muscle.bedGraph SRX=SRX257172 |
| 96 | 8c368a17 | Daofeng Li | BisSeq08_sphere_parthenogenesis_control.bedGraph SRX=SRX257193 |
| 97 | 8c368a17 | Daofeng Li | BisSeq09_sphere_parthenogenesis_treatment.bedGraph SRX=SRX257188 |
| 98 | 8c368a17 | Daofeng Li | GSM1133391_chrall.sperm.bedGraph cell type=sperm; developmental stage=gamete; stain=Tubingen; library strategy=BS-Seq |
| 99 | 8c368a17 | Daofeng Li | GSM1133392_chrall.egg.bedGraph cell type=egg; developmental stage=gamete; stain=Tubingen; library strategy=BS-Seq |
| 100 | 8c368a17 | Daofeng Li | GSM1133393_chrall.16-cell.bedGraph cell type=16-cell; developmental stage=embryo; stain=Tubingen; library strategy=BS-Seq |
| 101 | 8c368a17 | Daofeng Li | GSM1133394_chrall.32-cell.bedGraph cell type=32-cell; developmental stage=embryo; stain=Tubingen; library strategy=BS-Seq |
| 102 | 8c368a17 | Daofeng Li | GSM1133395_chrall.64-cell.bedGraph cell type=64-cell; developmental stage=embryo; stain=Tubingen; library strategy=BS-Seq |
| 103 | 8c368a17 | Daofeng Li | GSM1133396_chrall.128-cell.bedGraph cell type=128-cell; developmental stage=embryo; stain=Tubingen; library strategy=BS-Seq |
| 104 | 8c368a17 | Daofeng Li | GSM1133397_chrall.1k-cell.bedGraph cell type=1k-cell; developmental stage=embryo; stain=Tubingen; library strategy=BS-Seq |
| 105 | 8c368a17 | Daofeng Li | GSM1133398_chrall.Germring.bedGraph cell type=Germring; developmental stage=embryo; stain=Tubingen; library strategy=BS-Seq |
| 106 | 8c368a17 | Daofeng Li | GSM1133399_chrall.testis.bedGraph cell type=testis; developmental stage=organ; stain=Tubingen; library strategy=BS-Seq |