root / mm9 / track2Detail_longrange @ 8c368a17
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| 1 |
Esc_20kb_hindIII_rep1 Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication=biological replicate 1; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Esc_20kb_hindIII_rep2 Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication=biological replicate 2; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Esc_20kb_NcoI Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=NcoI; Replication=N/A; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Esc_40kb_hindIII_rep1 Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication= biological replicate 1; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Esc_40kb_hindIII_rep2 Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication=biological replicate 2; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Esc_40kb_hindIII_combined Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=HindIII; Replication=replicates 1 and 2 combined; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Esc_40kb_NcoI Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse embryonic stem cell; Restriction enzyme=NcoI; Replication=N/A; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Cortex_20kb_hindIII_rep1 Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=biological replicate 1; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Cortex_20kb_hindIII_rep2 Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=biological replicate 2; Bin size=20 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Cortex_40kb_hindIII_rep1 Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=biological replicate 1; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Cortex_40kb_hindIII_rep2 Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=biological replicate 2; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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Cortex_40kb_hindIII_combined Publication=Topological domains in mammalian genomes identified by analysis of chromatin interactions; Journal=Nature 485, 376–380; Year=2012; Institution=UCSD; PI=Bing Ren; Sample=Mouse cortex; Restriction enzyme=HindIII; Replication=replicates 1 and 2 combined; Bin size=40 kb; URL=http://chromosome.sdsc.edu/mouse/hi-c/download.html |
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GSE28247_st3ab Publication=CTCF-Mediated Functional Chromatin Interactome in Pluripotent Cells; Journal=Nat Genet 19;43(7):630-8; Year=2011; Institution=Genome Institute of Singapore; PI=Chia-Lin Wei; Sample=Mouse E14 embryonic stem cell; Source=Supplementary table 3a and 3b; Note=Intra- and inter-chromosomal interaction clusters |
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GSE28247_st3c Publication=CTCF-Mediated Functional Chromatin Interactome in Pluripotent Cells; Journal=Nat Genet 19;43(7):630-8; Year=2011; Institution=Genome Institute of Singapore; PI=Chia-Lin Wei; Sample=Mouse E14 embryonic stem cell; Source=Supplementary table 3c; Note=CTCF-associated interactions |
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GSM870040 Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr2:180173673 (mm9); Biological replicate=1; Original file=GSM870040_ATM-67-R1.validPair.txt.gz |
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GSM870041 Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr2:180173673 (mm9); Biological replicate=2; Original file=GSM870041_ATM-67-R2.validPair.txt.gz |
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GSM870042 Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr7:31203181 (mm9); Biological replicate=1; Original file=GSM870042_ATM-5353-R1.validPair.txt.gz |
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GSM870043 Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr18:70688564 (mm9); Biological replicate=1; Original file=GSM870043_ATM-5714-R1.validPair.txt.gz |
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GSM870044 Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; i-scei integration location=chr18:70688564 (mm9); Biological replicate=1; Original file=GSM870044_ATM-5714-R2.validPair.txt.gz |
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GSM870045 Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; i-scei integration location=chr15:5565929 (mm9); Biological replicate=1; Original file=GSM870045_WT-416I818-R1.validPair.txt.gz |
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GSM870046 Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; i-scei integration location=chr2:148388069 (mm9); Biological replicate=1; Original file=GSM870046_WT-416I825-R1.validPair.txt.gz |
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GSE35519_ATM_10m Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; Bin size=10MB; Original file=GSE35519_AMuLV-ATM-pooled-10M-allxall-ICed.txt.gz |
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GSE35519_ATM_1m Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; Bin size=1MB; Original file=GSE35519_AMuLV-ATM-pooled-1M-allxall-ICed.txt.gz |
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GSE35519_ATM_100k Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=ATM-/-; Treatment=STI571 for 2d; Bin size=100KB; Original file=GSE35519_AMuLV-ATM-pooled-100k-allxall-ICed.txt.gz |
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GSE35519_WT_1m Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; Bin size=1MB; Original file=GSE35519_AMuLV-WT-pooled-1M-allxall-ICed.txt.gz |
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GSE35519_WT_10m Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; Bin size=10MB; Original file=GSE35519_AMuLV-WT-pooled-10M-allxall-ICed.txt.gz; Note=chr20 in original file was replaced with chrX |
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GSE35519_WT_100k Publication=Chromosomal translocations are guided by the spatial organization of the genome; Journal=Cell 148(5):908-21; Year=2012; Institution=University of Massachusetts Medical School; PI=Job Dekker; Cell type=A-MuLV transformed pro-B cells; Genotype=WT; Treatment=STI571 for 2d; Bin size=100KB; Original file=GSE35519_AMuLV-WT-pooled-100K-allxall-ICed.txt.gz; Note=chr20 in original file was replaced with chrX |