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| 1 |
knownGene UCSC genes \N 2 0 1 http://genome.ucsc.edu/cgi-bin/hgGene?hgg_type=knownGene&db=hg19&hgg_gene= |
|---|---|
| 2 |
knownGenepromoter promoters (UCSC genes) knownGene 2 0 0 \N |
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knownGeneutr3 3' UTRs (UCSC genes) knownGene 2 0 0 \N |
| 4 |
knownGeneutr5 5' UTRs (UCSC genes) knownGene 2 0 0 \N |
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knownGeneexons exons (UCSC genes) knownGene 2 0 0 \N |
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knownGeneintrons introns (UCSC genes) knownGene 2 0 0 \N |
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refGene RefSeq genes \N 2 0 1 http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=Nucleotide&doptcmdl=GenBank&term= |
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refGenepromoter promoters (RefSeq genes) refGene 2 0 0 \N |
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refGeneutr3 3' UTRs (RefSeq genes) refGene 2 0 0 \N |
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refGeneutr5 5' UTRs (RefSeq genes) refGene 2 0 0 \N |
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refGeneexons exons (RefSeq genes) refGene 2 0 0 \N |
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refGeneintrons introns (RefSeq genes) refGene 2 0 0 \N |
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ensGene Ensembl genes \N 2 0 1 http://www.ensembl.org/Homo_sapiens/geneview?gene= |
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ensGenepromoter promoters (Ensembl genes) ensGene 2 0 0 \N |
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ensGeneutr3 3' UTRs (Ensembl genes) ensGene 2 0 0 \N |
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ensGeneutr5 5' UTRs (Ensembl genes) ensGene 2 0 0 \N |
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ensGeneexons exons (Ensembl genes) ensGene 2 0 0 \N |
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ensGeneintrons introns (Ensembl genes) ensGene 2 0 0 \N |
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gencodev11Gene ENCODE/GENCODE genes v11 \N 2 0 1 http://www.ensembl.org/Homo_sapiens/Transcript/Summary?db=core;t= |
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gencodev11Genepromoter promoters (ENCODE/GENCODE v11) gencodev11Gene 2 0 0 \N |
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gencodev11Geneutr3 3' UTRs (ENCODE/GENCODE v11) gencodev11Gene 2 0 0 \N |
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gencodev11Geneutr5 5' UTRs (ENCODE/GENCODE v11) gencodev11Gene 2 0 0 \N |
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gencodev11Geneexons exons (ENCODE/GENCODE v11) gencodev11Gene 2 0 0 \N |
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gencodev11Geneintrons introns (ENCODE/GENCODE v11) gencodev11Gene 2 0 0 \N |
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rmsk_ensemble RepeatMasker Ensemble \N 4 12 0 \N |
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RNA RNA \N 4 0 0 \N |
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RNAsrpRNA srpRNA (RNA) RNA 4 0 0 \N |
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RNArRNA rRNA (RNA) RNA 4 0 0 \N |
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RNAsnRNA snRNA (RNA) RNA 4 0 0 \N |
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RNAtRNA tRNA (RNA) RNA 4 0 0 \N |
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RNAscRNA scRNA (RNA) RNA 4 0 0 \N |
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RNARNA RNA (RNA) RNA 4 0 0 \N |
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DNA DNA transposon \N 4 0 0 \N |
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DNAMerlin Merlin (DNA transposon) DNA 4 0 0 \N |
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DNATcMar TcMar (DNA transposon) DNA 4 0 0 \N |
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DNATcMar? TcMar? (DNA transposon) DNA 4 0 0 \N |
| 37 |
DNAhAT-Tip100 hAT-Tip100 (DNA transposon) DNA 4 0 0 \N |
| 38 |
DNAhAT-Charlie hAT-Charlie (DNA transposon) DNA 4 0 0 \N |
| 39 |
DNATcMar-Mariner TcMar-Mariner (DNA transposon) DNA 4 0 0 \N |
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DNAMuDR MuDR (DNA transposon) DNA 4 0 0 \N |
| 41 |
DNADNA DNA (DNA transposon) DNA 4 0 0 \N |
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DNAPiggyBac PiggyBac (DNA transposon) DNA 4 0 0 \N |
| 43 |
DNAPiggyBac? PiggyBac? (DNA transposon) DNA 4 0 0 \N |
| 44 |
DNATcMar-Tc2 TcMar-Tc2 (DNA transposon) DNA 4 0 0 \N |
| 45 |
DNAhAT-Blackjack hAT-Blackjack (DNA transposon) DNA 4 0 0 \N |
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DNATcMar-Tigger TcMar-Tigger (DNA transposon) DNA 4 0 0 \N |
| 47 |
DNAhAT hAT (DNA transposon) DNA 4 0 0 \N |
| 48 |
DNAhAT? hAT? (DNA transposon) DNA 4 0 0 \N |
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SINE SINE \N 4 0 0 \N |
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SINEMIR MIR (SINE) SINE 4 0 0 \N |
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SINESINE SINE (SINE) SINE 4 0 0 \N |
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SINEDeu Deu (SINE) SINE 4 0 0 \N |
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SINEtRNA tRNA (SINE) SINE 4 0 0 \N |
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SINEAlu Alu (SINE) SINE 4 0 0 \N |
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LINE LINE \N 4 0 0 \N |
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LINERTE RTE (LINE) LINE 4 0 0 \N |
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LINERTE-BovB RTE-BovB (LINE) LINE 4 0 0 \N |
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LINEL2 L2 (LINE) LINE 4 0 0 \N |
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LINEL1 L1 (LINE) LINE 4 0 0 \N |
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LINEL1? L1? (LINE) LINE 4 0 0 \N |
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LINEDong-R4 Dong-R4 (LINE) LINE 4 0 0 \N |
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LINECR1 CR1 (LINE) LINE 4 0 0 \N |
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LTR LTR \N 4 0 0 \N |
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LTRERV ERV (LTR) LTR 4 0 0 \N |
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LTRLTR LTR (LTR) LTR 4 0 0 \N |
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LTRERVL ERVL (LTR) LTR 4 0 0 \N |
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LTRERVL? ERVL? (LTR) LTR 4 0 0 \N |
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LTRERVK ERVK (LTR) LTR 4 0 0 \N |
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LTRERVL-MaLR ERVL-MaLR (LTR) LTR 4 0 0 \N |
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LTRGypsy Gypsy (LTR) LTR 4 0 0 \N |
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LTRGypsy? Gypsy? (LTR) LTR 4 0 0 \N |
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LTRERV1 ERV1 (LTR) LTR 4 0 0 \N |
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Low_complexity low complexity \N 4 0 0 \N |
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Satellite satellite \N 4 0 0 \N |
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SatelliteSatellite Satellite (satellite) Satellite 4 0 0 \N |
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Satellitecentr centr (satellite) Satellite 4 0 0 \N |
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Satelliteacro acro (satellite) Satellite 4 0 0 \N |
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Satellitetelo telo (satellite) Satellite 4 0 0 \N |
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Simple_repeat simple repeat \N 4 0 0 \N |
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Other other repeats \N 4 0 0 \N |
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Unknown unknown \N 4 0 0 \N |
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vertebratephastCons46way vertebrate PhastCons \N 6 8 0 \N |
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primatephastCons46way primate PhastCons \N 6 8 0 \N |
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placentalphastCons46way placental PhastCons \N 6 8 0 \N |
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vertebratephyloP46way vertebrate PhyloP \N 6 8 0 \N |
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primatephyloP46way primate PhyloP \N 6 8 0 \N |
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placentalphyloP46way placental PhyloP \N 6 8 0 \N |
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cpgisland CpG island \N 5 0 0 \N |
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gc5Base GC percent \N 5 14 0 \N |
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wgEncodeCrgMapabilityAlign100mer 100mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |
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wgEncodeCrgMapabilityAlign40mer 40mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |
| 92 |
wgEncodeCrgMapabilityAlign24mer 24mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |
| 93 |
wgEncodeCrgMapabilityAlign50mer 50mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |
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wgEncodeCrgMapabilityAlign36mer 36mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |
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wgEncodeCrgMapabilityAlign75mer 75mer alignability ENCODE/CRG(Guigo) \N 7 14 0 \N |