News
WashU Epigenome Browser: washugb v29 release
- We have released v29 of WashU EpiGenome Browser.
Updates:¶
- access HTTPS resources, including Dropbox, for details please see: http://washugb.blogspot.com/2013/11/v29-1-of-4-access-https-resources.html
- displaying track hubs from UCSC Genome Browser, for details please see: http://washugb.blogspot.com/2013/11/v29-2-of-4-displaying-track-hubs-from.html
- delete custom tracks, for details please see: http://washugb.blogspot.com/2013/11/v29-3-of-4-delete-custom-tracks.html
- the methylC track, for details please see: http://washugb.blogspot.com/2013/11/v29-4-of-4-methylc-track.html
WashU Epigenome Browser: washugb v28 release
updates¶
- multiple track selection, for details please see: http://washugb.blogspot.com/2013/11/v28-1-of-2-multiple-track-selection.html
- new UI of track configuration, for details please see: http://washugb.blogspot.com/2013/11/v28-2-of-2-track-configuration.html
WashU Epigenome Browser: washugb v27 release
- We have released v27 of WashU EpiGenome Browser.
Updates:¶
- GENCODE V17 track for the human genome, for details please see: http://washugb.blogspot.com/2013/11/v27-1-of-3-gencode-v17-track-for-human.html
- make screenshot for Genome snapshot, for details please see: http://washugb.blogspot.com/2013/11/v27-2-of-3-make-screenshot-for-genome.html
- custom track listing, for details please see: http://washugb.blogspot.com/2013/11/v27-3-of-3-custom-track-listing.html
WashU Epigenome Browser: washugb v26 release
We have applied v26 source code to our public servers.
updates:¶
- SNP information is a long-desired feature and we've finally got it on our browser. Credit goes to UCSC Genome Browser for making SNP information nicely curated and easily accessible. For details, please see http://washugb.blogspot.com/2013/10/v26-1-of-3-snp-track.html
- A minor update to RepeatMasker tracks has been made, which is the ability to grade repetitive elements by their Smith-Waterman alignment scores. For details please see http://washugb.blogspot.com/2013/10/v26-2-of-3-repeatmasker-tracks.html
- A minor improvement has been made that allows you to smooth the graph of a quantitative track using window mean values. For details please see http://washugb.blogspot.com/2013/10/v26-3-of-3-smoothing-curves.html
WashU Epigenome Browser: washugb v25 release
- Version 25 features a nice way to display CpG methylation data, and the track background color configuration, and a background color could also be applied to tracks now. For details please see: http://washugb.blogspot.com/2013/10/v25-new-display-methods-for-methylc-seq.html
WashU Epigenome Browser: washugb v24 release
We have applied version 24 browser today!
New genomes¶
- Soybean Glycine max, version 189
- Common bean Phaseolus vulgaris, version 218
- Chinese cabbage Brassica rapa, version 1.1
- Autographa californica nucleopolyhedrovirus (no version info)
JSON datahub format¶
- for details please see: http://washugb.blogspot.com/2013/09/v24-2-of-3-json-datahub-format.html
facet panel¶
- for detail please see: http://washugb.blogspot.com/2013/09/v24-3-of-3-facet-panel.html
WashU Epigenome Browser: washugb v23 release
We have applied version 23 of washugb code to our public servers today.
Updates:¶
- custom categorical track was supported now, for details, see official blog post: http://washugb.blogspot.com/2013/08/v23-custom-categorical-track.html
- mouse genome mm10 added
WashU Epigenome Browser: washugb v22 release
We have applied v22 source code to our public servers.
updates:¶
Please see our blog plots for details:
- v22 (1 of 3): call super enhancer using ROSE: http://washugb.blogspot.com/2013/07/v22-1-of-3-call-super-enhancer-using.html
- v22 (2 of 3): public datahubs: http://washugb.blogspot.com/2013/07/v22-2-of-3-public-datahubs.html
- v22 (3 of 3): better track search, and information display: http://washugb.blogspot.com/2013/07/v22-3-of-3-better-track-search-and.html
WashU Epigenome Browser: washugb v21 release
We just applied the v21 source code to our public servers.
Function updates:¶
- the new 'Gene Set' under 'Apps'
- add support for customized bed-like files
- all utils (gene set view, gene plot, scatter plot) related to a list of genes could be operated from here
- the gene list could be added to genome snapshot
- version code added at top-left corner
Data updates:¶
- we updated the default tracks of Zebrafish (danRer7) and meta data
- the danRer7 tracks were collected by HyungJoo Lee from Wang Lab
See the official blog post for details please:
v21: Creating and managing multiple gene sets: http://washugb.blogspot.com/2013/07/v21-creating-and-managing-multiple-gene.html
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